miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00726;mir-87;AASW01042897.1/1205-1302 7240:Drosophila simulans
Length = 98
Score = 153 bits (77), Expect = 5e-37
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgatccggttgag 63
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 5 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 64
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatgtgtt 93
>RF00726;mir-87;AAPP01015726.1/103266-103169 7217:Drosophila
ananassae
Length = 98
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgatccggtt 60
|||||||||||||||||||||||||||||||||||| || |||||| | ||||||||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggtt 61
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 62 gagcaaaatttcaggtgtgtgagaaatttgtt 93
>RF00726;mir-87;AADE01000150.1/47415-47513 46245:Drosophila
pseudoobscura pseudoobscura
Length = 99
Score = 121 bits (61), Expect = 2e-27
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgat-ccggt 59
||||||||||||||||||||||||||||||||||| ||||| |||| || || |||||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 61
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 62 tgagcaaaatttcaggtgtgtgagaaatttgtt 94
>RF00726;mir-87;AAPU01010611.1/255409-255311 7230:Drosophila
mojavensis
Length = 99
Score = 95.6 bits (48), Expect = 9e-20
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacga-tccggttgag 63
|||||||||||||||||||||||||||||||| | ||| | | | | | ||||||||||
Sbjct: 6 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatttgt 93
>RF00726;mir-87;AAQB01006452.1/3553-3454 7260:Drosophila
willistoni
Length = 100
Score = 89.7 bits (45), Expect = 6e-18
Identities = 83/93 (89%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttgcca-ttatggcctacgat-ccgg 58
|||||||||||||||||||||||||||||||||||| ||| || || | | | ||||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 61
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 62 ttgagcaaaatttcaggtgtgtgagaaatttgt 94
