miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
melanogaster (fruit fly)
Length = 90
Score = 163 bits (82), Expect = 5e-40
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 60
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90
>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
pseudoobscura pseudoobscura
Length = 89
Score = 119 bits (60), Expect = 6e-27
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 cggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcg 84
>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
mojavensis
Length = 89
Score = 103 bits (52), Expect = 4e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 60
Query: 62 tctcttagtggcatctatggtgcg 85
||||||||||||||||||||||||
Sbjct: 61 tctcttagtggcatctatggtgcg 84
>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt 41
||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41
>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt 41
||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41
>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
vitripennis (jewel wasp)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacgggg 40
|||||||||||||||||||||||||
Sbjct: 17 aatggcactggaagaattcacgggg 41
>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
(honey bee)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacgggg 40
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
gambiae str. PEST
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;ABLF01028761.1/10726-10634 7029:Acyrthosiphon
pisum (pea aphid)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggtac 43
|||||||||| |||||||||||||||||
Sbjct: 16 aatggcactgaaagaattcacggggtac 43
>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggg 39
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cccgtgatctcttagtggcatc 76
||||||||||||||||||||||
Sbjct: 55 cccgtgatctcttagtggcatc 76
