miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00788;mir-287;AAPQ01007040.1/1493379-1493287 7220:Drosophila
erecta
Length = 93
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gacgctggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gacgctggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaa 63
Query: 61 atgtgttgaaaatcgtttgcacgactgcga 90
||||||||||||||||||||||||||||||
Sbjct: 64 atgtgttgaaaatcgtttgcacgactgcga 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAPP01015675.1/1283611-1283521 7217:Drosophila
ananassae
Length = 91
Score = 113 bits (57), Expect = 4e-25
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgact 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 28 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaact 87
Query: 87 g 87
|
Sbjct: 88 g 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAEU02000290.1/178244-178333 7245:Drosophila
yakuba
Length = 90
Score = 111 bits (56), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 6 tggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaaatgtg 65
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 9 tggatgtatgggtgtggg---tctgaaattttgcacacatttacagtaattgtaaatgtg 65
Query: 66 ttgaaaatcgtttgcacgactg 87
|||||||||||||||| |||||
Sbjct: 66 ttgaaaatcgtttgcatgactg 87
>RF00788;mir-287;AAGH01003987.1/3230-3289 7240:Drosophila simulans
Length = 60
Score = 111 bits (56), Expect = 2e-24
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 30 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 1
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 20 acacatttacaattattgtaaatgtgt 46
>RF00788;mir-287;AAPU01010664.1/17553-17645 7230:Drosophila
mojavensis
Length = 93
Score = 109 bits (55), Expect = 6e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAFS01000718.1/2117-2027 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 105 bits (53), Expect = 9e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 31 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 32 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAQB01006734.1/267050-266959 7260:Drosophila
willistoni
Length = 92
Score = 103 bits (52), Expect = 4e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 28 tctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
|||||||||||||||||||||||||||
Sbjct: 67 acacatttacaataattgtaaatgtgt 41
