miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00787;mir-288;AC093440.2/172834-172738 7227:Drosophila
melanogaster (fruit fly)
Length = 97
Score = 153 bits (77), Expect = 5e-37
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||| ||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>RF00787;mir-288;AAQB01006401.1/336794-336697 7260:Drosophila
willistoni
Length = 98
Score = 109 bits (55), Expect = 7e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcaggacacgg 94
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 36 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 95
Query: 95 ccg 97
|||
Sbjct: 96 ccg 98
>RF00787;mir-288;AANI01016239.1/44496-44592 7244:Drosophila
virilis
Length = 97
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | || | |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcaggacacggccg 97
||||||||||||||||||| ||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
