miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00743;mir-308;AE013599.4/10103369-10103307 7227:Drosophila
melanogaster (fruit fly)
Length = 63
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaaatcaaatcacaggattatactgt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 61 gag 63
|||
Sbjct: 61 gag 63
>RF00743;mir-308;AAPU01010142.1/147078-147139 7230:Drosophila
mojavensis
Length = 62
Score = 77.8 bits (39), Expect = 1e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaaatcaaatcacaggattatactgt 60
||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttta-ttataaaaatcaaatcacaggattatactgt 59
Query: 61 gag 63
|||
Sbjct: 60 gag 62
>RF00743;mir-308;AADE01001573.1/8261-8200 46245:Drosophila
pseudoobscura pseudoobscura
Length = 62
Score = 61.9 bits (31), Expect = 8e-10
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaaatcaaatcacaggattatactgt 60
|||||||||||||||||||||||||| | | || || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
Query: 61 gag 63
|||
Sbjct: 60 gag 62
>RF00743;mir-308;AAWU01008421.1/27722-27788 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 67
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tcaaatcacaggattatactgtgag 63
||||||||||||| |||||||||||
Sbjct: 43 tcaaatcacaggagtatactgtgag 67
>RF00743;mir-308;AAGE02006324.1/6463-6527 7159:Aedes aegypti
(yellow fever mosquito)
Length = 65
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tcaaatcacaggattatactgtgag 63
||||||||||||| |||||||||||
Sbjct: 41 tcaaatcacaggagtatactgtgag 65
>RF00743;mir-308;ABKQ02024255.1/111320-111257 377270:Anopheles
gambiae S
Length = 64
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tcaaatcacaggattatactgtgag 63
||||||||||||| |||||||||||
Sbjct: 40 tcaaatcacaggagtatactgtgag 64
