miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;EU941000.1/258-87 4577:Zea mays
Length = 172
Score = 325 bits (164), Expect = 2e-88
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 54 agatggagagccccttttggtagccaagaatgacttgcctatgcacgccctctgttggta 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 172 agatggagagccccttttggtagccaagaatgacttgcctatgcacgccctctgttggca 113
Query: 114 gttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatg 53
Query: 174 caatgcggctgcatcggcaggtcttcttggctagacagagggctctcgtcca 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52 caatgcggctgcatcggcaggtcttcttggctagccagagggctctcgtcca 1
>RF00645;MIR169_2;EU941000.1/95-252 4577:Zea mays
Length = 158
Score = 297 bits (150), Expect = 4e-80
Identities = 156/158 (98%)
Strand = Plus / Plus
Query: 62 agccccttttggtagccaagaatgacttgcctatgcacgccctctgttggtagttccgtc 121
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 agccccttttggtagccaagaatgacttgcctatgcacgccctctgttggcagttccgtc 60
Query: 122 cggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatgcaatgcgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatgcaatgcgg 120
Query: 182 ctgcatcggcaggtcttcttggctagacagagggctct 219
|||||||||||||||||||||||||| |||||||||||
Sbjct: 121 ctgcatcggcaggtcttcttggctagccagagggctct 158
>RF00865;MIR169_5;ABXC01003263.1/1171-1002 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 127 bits (64), Expect = 9e-29
Identities = 152/177 (85%), Gaps = 12/177 (6%)
Strand = Plus / Minus
Query: 54 agatggagagcccc-ttttggtagccaagaatgacttgcctatgcacgccctctgttggt 112
|||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 170 agatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggc 111
Query: 113 agttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtgga---- 168
| |||| || ||||||||| || ||||||||||||| |||||||||| | ||
Sbjct: 110 aattcc-tc---cagccatggaga---ttgcacaaggtgaatttttgcggcatagatgat 58
Query: 169 ggatgcaatgcggctgcatcggcaggtcttcttggctagacagagggctctcgtcca 225
|||||||||| |||||||| ||||||||||||||||||| ||||| |||||| ||||
Sbjct: 57 ggatgcaatgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 1
>RF00865;MIR169_5;AAAA02031014.1/17953-17766 39946:Oryza sativa
Indica Group
Length = 188
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 69 tttggtagccaagaatgacttgcctatgc 97
|||||||||||||||||||||||||||||
Sbjct: 170 tttggtagccaagaatgacttgcctatgc 142
Score = 54.0 bits (27), Expect = 1e-06
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 172 tgcaatgcggctgcatcggcaggtcttcttggctagacagag-ggctctcgtcca 225
||||||| |||||||| ||| ||||||||||||||| ||||| ||||||| ||||
Sbjct: 55 tgcaatgtggctgcatgggccggtcttcttggctagccagagtggctctcatcca 1
>RF00865;MIR169_5;AC123517.2/63512-63700 39947:Oryza sativa Japonica
Group
Length = 189
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 69 tttggtagccaagaatgacttgcctatg 96
||||||||||||||||||||||||||||
Sbjct: 176 tttggtagccaagaatgacttgcctatg 149
Score = 52.0 bits (26), Expect = 4e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 172 tgcaatgcggctgcatcggcaggtcttcttggctagacagag 213
||||||| |||||||| ||| ||||||||||||||| |||||
Sbjct: 50 tgcaatgtggctgcatgggccggtcttcttggctagccagag 9
>RF00865;MIR169_5;AC123517.2/59786-59972 39947:Oryza sativa Japonica
Group
Length = 187
Score = 52.0 bits (26), Expect = 4e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 172 tgcaatgcggctgcatcggcaggtcttcttggctagacagag 213
||||||| |||||||| ||| ||||||||||||||| |||||
Sbjct: 52 tgcaatgaggctgcatgggccggtcttcttggctagccagag 11
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 69 tttggtagccaagaatgacttgccta 94
||||||||||||||||||||||||||
Sbjct: 174 tttggtagccaagaatgacttgccta 149
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 69 tttggtagccaagaatgacttgcct 93
|||||||||||||||||||||||||
Sbjct: 144 tttggtagccaagaatgacttgcct 120
>RF00645;MIR169_2;ABIM01014270.1/4721-4577 3649:Carica papaya
(papaya)
Length = 145
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tttggtagccaagaatgacttgcct 93
|||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcct 32
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 tttggtagccaagaatgacttgcc 92
||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcc 31
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 tttggtagccaagaatgacttgcctat 95
||||||||||||| |||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgcctat 100
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tttggtagccaagaatgacttgcctat 95
||||||||||||| |||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgcctat 37
