miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AAPT01020768.1/61474-61396 7222:Drosophila
grimshawi
Length = 79
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 aaggaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aaggaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtgg 62
Query: 61 ctgttcttttttgt 74
||||||||||||||
Sbjct: 63 ctgttcttttttgt 76
>RF00143;mir-6;AAIZ01001618.1/40271-40349 7234:Drosophila
persimilis
Length = 79
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 4 gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63
|||| ||||| | ||||||||||||||||| | ||| | | ||||||||||||||||||
Sbjct: 6 gaagggaacggttgctgctgatgtagttcaagtttcgcacaatttatatcacagtggctg 65
Query: 64 ttcttttttgt 74
|||||||||||
Sbjct: 66 ttcttttttgt 76
>RF00143;mir-6;AAPP01018770.1/57538-57612 7217:Drosophila
ananassae
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/71 (85%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 4 gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63
|||| ||||| ||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 6 gaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagtggctg 61
Query: 64 ttcttttttgt 74
|||||||||||
Sbjct: 62 ttcttttttgt 72
>RF00143;mir-6;AAPU01010225.1/182811-182733 7230:Drosophila
mojavensis
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 tttatatcacagtggctgttcttttttgt 74
|||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgt 76
>RF00143;mir-6;AANI01014795.1/40023-40100 7244:Drosophila virilis
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 tttatatcacagtggctgttcttttttgt 74
|||||||||||||||||||||||||||||
Sbjct: 47 tttatatcacagtggctgttcttttttgt 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 aaggaagagaacgctcgctgctgatgtagt 30
||||||||||||| |||||| |||||||||
Sbjct: 3 aaggaagagaacgttcgctgttgatgtagt 32
>RF00143;mir-6;AAQB01006291.1/70803-70723 7260:Drosophila
willistoni
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttttgt 74
|||||||||||||||||||||||||||
Sbjct: 52 tatatcacagtggctgttcttttttgt 78
>RF00143;mir-6;AAEU02000463.1/591532-591454 7245:Drosophila yakuba
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 tttatatcacagtggctgttctttttt 72
|||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttctttttt 74
>RF00143;mir-6;AAPU01010225.1/183158-183087 7230:Drosophila
mojavensis
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tttatatcacagtggctgttcttttt 71
||||||||||||||||||||||||||
Sbjct: 41 tttatatcacagtggctgttcttttt 66
>RF00143;mir-6;AAQB01006291.1/70967-70870 7260:Drosophila
willistoni
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 69 tatatcacagtggctgttcttttt 92
>RF00143;mir-6;AAIZ01001618.1/40125-40208 7234:Drosophila
persimilis
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 55 tatatcacagtggctgttcttttt 78
>RF00143;mir-6;AAPP01018770.1/57233-57304 7217:Drosophila
ananassae
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66
>RF00143;mir-6;AAQB01006291.1/71126-71052 7260:Drosophila
willistoni
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 attttatatcacagtggctgttcttttt 71
|||| |||||||||||||||||||||||
Sbjct: 42 atttcatatcacagtggctgttcttttt 69
>RF00143;mir-6;AAPP01018770.1/57378-57462 7217:Drosophila
ananassae
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>RF00143;mir-6;AAGH01003023.1/9218-9292 7240:Drosophila simulans
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>RF00143;mir-6;AADE01001895.1/3626-3699 46245:Drosophila
pseudoobscura pseudoobscura
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>RF00143;mir-6;AAST01030396.1/2399-2475 7240:Drosophila simulans
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>RF00143;mir-6;AAPT01006453.1/3396-3470 7222:Drosophila grimshawi
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>RF00143;mir-6;AAPT01006453.1/3535-3614 7222:Drosophila grimshawi
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>RF00143;mir-6;AANI01014795.1/39694-39769 7244:Drosophila virilis
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>RF00143;mir-6;AAPU01010225.1/182992-182911 7230:Drosophila
mojavensis
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tatatcacagtggctgttcttttt 71
||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76
>RF00143;mir-6;AANI01014795.1/39849-39929 7244:Drosophila virilis
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 atatcacagtggctgttcttttt 71
|||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75
>RF00143;mir-6;AASV01054526.1/876-807 7240:Drosophila simulans
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atatcacagtggctgttctttt 70
||||||||||||||||||||||
Sbjct: 43 atatcacagtggctgttctttt 64
