miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00751;mir-12;AAPU01008564.1/43041-43114 7230:Drosophila
          mojavensis
          Length = 74

 Score =  131 bits (66), Expect = 1e-30
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaaccaacaaccagtacttatgt 60
          ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccaattaactaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>RF00751;mir-12;AADE01000788.1/13719-13792 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 74

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaaccaacaaccagtacttatgt 60
          ||||| |||||||||||||||||||||||||||  |  | ||||||||||||||||||||
Sbjct: 1  tacggctgagtattacatcaggtactggtgtgctttaaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
           |||||||||||||
Sbjct: 61 tatactacgccgtg 74




>RF00751;mir-12;AADG05008150.1/22506-22436 7460:Apis mellifera
          (honey bee)
          Length = 71

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 7  tgagtattacatcaggtactggtgtg 32
          ||||||||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactggtgtg 32




>RF00751;mir-12;AAZX01000006.1/25515-25586 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 72

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 7  tgagtattacatcaggtactggtgt 31
          |||||||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactggtgt 31




>RF00751;mir-12;AAJJ01005828.1/1033-1102 7070:Tribolium castaneum
          (red flour beetle)
          Length = 70

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  ttgagtattacatcaggtactggt 29
          ||||||||||||||||||||||||
Sbjct: 6  ttgagtattacatcaggtactggt 29




>RF00751;mir-12;ABJB010368806.1/9372-9305 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 7  tgagtattacatcaggtactggt 29
          |||||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactggt 29