miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAPT01021280.1/172982-172862 7222:Drosophila
grimshawi
Length = 121
Score = 240 bits (121), Expect = 4e-63
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagcacaagatcacaaatcaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgacagcacaagatcacaaatcaagaa 60
Query: 61 actttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
Query: 121 c 121
|
Sbjct: 121 c 121
>RF00661;mir-31;AANI01013847.1/25203-25083 7244:Drosophila virilis
Length = 121
Score = 176 bits (89), Expect = 5e-44
Identities = 113/121 (93%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagcacaagatcacaaatcaagaa 60
|||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcacaaagtcataaatccagaa 60
Query: 61 actttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
Query: 121 c 121
|
Sbjct: 121 c 121
>RF00661;mir-31;AAPU01009413.1/121752-121873 7230:Drosophila
mojavensis
Length = 122
Score = 141 bits (71), Expect = 3e-33
Identities = 113/123 (91%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagcacaag-atcaca-aatcaag 58
|||||||||||||||||||||||||||||||||||| ||||||| |||| | |||| ||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcacaaatatcatagaatccag 60
Query: 59 aaactttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgca 118
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttatattttgtgtatttt-attgagtacagcggctatgcctcatctagtcaattgca 119
Query: 119 ttc 121
|||
Sbjct: 120 ttc 122
>RF00661;mir-31;AAPP01016551.1/245474-245363 7217:Drosophila
ananassae
Length = 112
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagcaca 43
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||| ||||
Sbjct: 81 agcggctatgcctcatctagtcaattacatt 111
>RF00661;mir-31;AAPQ01005997.1/12172-12293 7220:Drosophila erecta
Length = 122
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagcaca 43
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>RF00661;mir-31;AAIZ01004624.1/839-930 7234:Drosophila persimilis
Length = 92
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgacagca 41
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagca 41
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 91 gcggctatgcctcatctagtcaattgcattc 121
|||||||||||||||||||||||||||||||
Sbjct: 62 gcggctatgcctcatctagtcaattgcattc 92
>RF00661;mir-31;AAQB01010380.1/1470-1604 7260:Drosophila willistoni
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 92 cggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||
Sbjct: 106 cggctatgcctcatctagtcaattgcatt 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 atttggcaagatgtcggaatagctga 36
||||||||||||||||||||||||||
Sbjct: 11 atttggcaagatgtcggaatagctga 36
