miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattaa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaa 26
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattaa 32
||||||||||||||||||||||
Sbjct: 113 tactccctccgtcccaaattaa 92
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattaa 32
||||||||||||||||||||||
Sbjct: 90 tactccctccgtcccaaattaa 69
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaattaaa 33
||||||||||||||||||||| ||||
Sbjct: 104 tactactccctccgtcccaaaataaa 79
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaattaaa 33
||||||||||||||||||||| ||||
Sbjct: 104 tactactccctccgtcccaaaataaa 79
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattaa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaa 26
>RF00906;MIR1122;AC104429.2/50540-50620 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 atactactccctccgtcccaaa 28
||||||||||||||||||||||
Sbjct: 81 atactactccctccgtcccaaa 60
>RF00906;MIR1122;AAAA02007985.1/61647-61567 39946:Oryza sativa
Indica Group
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atactactccctccgtcccaaa 28
||||||||||||||||||||||
Sbjct: 1 atactactccctccgtcccaaa 22
>RF00906;MIR1122;AP003046.2/109392-109265 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 atactactccctccgtcccaaa 28
||||||||||||||||||||||
Sbjct: 128 atactactccctccgtcccaaa 107
>RF00906;MIR1122;AL731597.3/103356-103467 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 atactactccctccgtcccaaa 28
||||||||||||||||||||||
Sbjct: 112 atactactccctccgtcccaaa 91
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaatta 31
|||||||||||||||||||||
Sbjct: 77 tactccctccgtcccaaatta 57
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 atactactccctccgtcccaaatta 31
|||||||||||||||| ||||||||
Sbjct: 1 atactactccctccgttccaaatta 25
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AP008208.1/309335-309214 39947:Oryza sativa
Japonica Group
Length = 122
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AAAA02003301.1/35949-35819 39946:Oryza sativa
Indica Group
Length = 131
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 130 tactactccctccgtcccaaa 110
>RF00906;MIR1122;AP006171.2/9738-9583 39947:Oryza sativa Japonica
Group
Length = 156
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 155 tactactccctccgtcccaaa 135
>RF00906;MIR1122;AP002744.2/5581-5711 39947:Oryza sativa Japonica
Group
Length = 131
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 130 tactactccctccgtcccaaa 110
>RF00906;MIR1122;AAAA02004166.1/9974-9858 39946:Oryza sativa
Indica Group
Length = 117
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AP004851.3/37998-38119 39947:Oryza sativa Japonica
Group
Length = 122
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 121 tactactccctccgtcccaaa 101
>RF00906;MIR1122;AAAA02009296.1/3612-3735 39946:Oryza sativa Indica
Group
Length = 124
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 123 tactactccctccgtcccaaa 103
>RF00906;MIR1122;AP005510.3/22168-22263 39947:Oryza sativa
Japonica Group
Length = 96
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AC138197.3/31250-31161 39947:Oryza sativa
Japonica Group
Length = 90
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 89 tactactccctccgtcccaaa 69
>RF00906;MIR1122;AL831796.5/20323-20408 4530:Oryza sativa (rice)
Length = 86
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 2 tactactccctccgtcccaaa 22
>RF00906;MIR1122;AAAA02005722.1/24068-24224 39946:Oryza sativa
Indica Group
Length = 157
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtcccaaa 28
|||||||||||||||||||||
Sbjct: 156 tactactccctccgtcccaaa 136
