miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 113 bits (57), Expect = 8e-25
Identities = 128/148 (86%), Gaps = 14/148 (9%)
Strand = Plus / Plus
Query: 19 gtgcttgcaggtgcagcaccaccaagattcacat---ccaactctcacgcatcttcagtg 75
||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||
Sbjct: 1 gtgcttgcaggtgcagcaccatcaagattcacatggtccaactc--atgcatcttcagtg 58
Query: 76 atgcatgcatgctctgtgatgtctcgcagcagctata--tgcatatgtgatgagatgaga 133
|||| |||| ||||| ||||||| |||||| |||||||||||||||||||||
Sbjct: 59 atgct--catg-----tgatggctcgcagttgctatatatgcatatgtgatgagatgaga 111
Query: 134 atcttgatgatgctgcatcagcagacac 161
||||||||||||||||||||||||||||
Sbjct: 112 atcttgatgatgctgcatcagcagacac 139
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 109 tatatgcatatgtgatgagatgagaatcttgatgatgctgcatcagcagacac 161
||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 70 tatatgcgtatgtgatgagatgagaatcttgatgatgctgcatcagcaaacac 122
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 19 gtgcttgcaggtgcagcaccaccaagattcacatcca 55
|||||||||||||||||| || |||||||||||||||
Sbjct: 1 gtgcttgcaggtgcagcatcatcaagattcacatcca 37
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 116 atatgtgatgagatgagaatcttgatgatgctgcatcagcagacac 161
|||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 103 atatatgatgaaatgagaatcttgatgatgctgcatcagcagacac 148
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 gtgcttgcaggtgcagcaccaccaagattcacatc 53
||||||||||||||||||||| |||||||||||||
Sbjct: 1 gtgcttgcaggtgcagcaccatcaagattcacatc 35
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 127 gatgagaatcttgatgatgctgcatcagca 156
||||||||||||||||||||||||||||||
Sbjct: 78 gatgagaatcttgatgatgctgcatcagca 107
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 gcaggtgcagcaccaccaagattcacatc 53
||||||||||||||| |||||||||||||
Sbjct: 7 gcaggtgcagcaccatcaagattcacatc 35
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatcagca 156
|||||||||||||||||||||||||||||
Sbjct: 110 atgagaatcttgatgatgctgcatcagca 138
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatcagca 156
|||||||||||||||||||||||||||||
Sbjct: 135 atgagaatcttgatgatgctgcatcagca 163
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagca 156
||||||||||||||||||||||||||||
Sbjct: 127 tgagaatcttgatgatgctgcatcagca 154
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagca 156
||||||||||||||||||||||||||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagca 85
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 24 tgcaggtgcagcaccaccaagattcaca 51
|||||||||||||||| |||||||||||
Sbjct: 6 tgcaggtgcagcaccatcaagattcaca 33
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 124 tgagatgagaatcttgatgatgctgcat 151
||||||||||||||||||||||||||||
Sbjct: 74 tgagatgagaatcttgatgatgctgcat 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 132 gaatcttgatgatgctgcatcagc 155
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagcagaca 160
|||||||||||||||||||||||| |||||||
Sbjct: 77 tgagaatcttgatgatgctgcatccgcagaca 108
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagc 155
|||||||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgcatcagc 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 23 ttgcaggtgcagcaccaccaagattcacat 52
|||||||||||||| || ||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagc 155
|||||||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcatcagc 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 23 ttgcaggtgcagcaccaccaagattcacat 52
|||||||||||||| || ||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatcagc 155
|||||||||||||||||||||||||||
Sbjct: 128 tgagaatcttgatgatgctgcatcagc 154
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 ttgcaggtgcagcaccaccaagattcacat 52
|||||||||||||| |||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcaccaagattcacat 34
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 132 gaatcttgatgatgctgcatcagcaga 158
|||||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagcaga 132
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatca 153
||||||||||||||||||||||||||
Sbjct: 82 atgagaatcttgatgatgctgcatca 107
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatca 153
||||||||||||||||||||||||||
Sbjct: 76 atgagaatcttgatgatgctgcatca 101
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 127 gatgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||||
Sbjct: 78 gatgagaatcttgatgatgctgcatc 103
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatc 152
|||||||||||||||||||||||||
Sbjct: 140 atgagaatcttgatgatgctgcatc 164
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 132 gaatcttgatgatgctgcatcagca 156
|||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagca 92
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatc 152
|||||||||||||||||||||||||
Sbjct: 83 atgagaatcttgatgatgctgcatc 107
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 132 gaatcttgatgatgctgcatcagca 156
|||||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatcagca 120
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgcatc 152
|||||||||||||||||||||||||
Sbjct: 78 atgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||
Sbjct: 181 tgagaatcttgatgatgctgcatc 204
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgcatc 132
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgcatc 153
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatc 112
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcatc 152
||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatc 111
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 128 atgagaatcttgatgatgctgca 150
|||||||||||||||||||||||
Sbjct: 90 atgagaatcttgatgatgctgca 112
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgcat 151
|||||||||||||||||||||||
Sbjct: 129 tgagaatcttgatgatgctgcat 151
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgca 150
||||||||||||||||||||||
Sbjct: 81 tgagaatcttgatgatgctgca 102
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 127 gatgagaatcttgatgatgctgcatc 152
|||| |||||||||||||||||||||
Sbjct: 100 gatgggaatcttgatgatgctgcatc 125
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 129 tgagaatcttgatgatgctgca 150
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
