miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 188 bits (95), Expect = 2e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 127 tgcttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgcttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 185
Query: 187 gctgtttggagtgaagggagctctgcatcttgctc 221
|||||||||||||||||||||||||||||||||||
Sbjct: 186 gctgtttggagtgaagggagctctgcatcttgctc 220
Score = 184 bits (93), Expect = 4e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 2 ggtcttaaggcggtgctcccttcacaccaataaacggtcgatctgatgggtggtacagct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcttaaggcggtgctcccttcacaccaataaacggtcgatctgatgggtggtacagct 60
Query: 62 gctcgttcatggttcccactgtcccatctcatc 94
|||||||||||||||||||||||||||||||||
Sbjct: 61 gctcgttcatggttcccactgtcccatctcatc 93
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 117 bits (59), Expect = 7e-26
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 127 tgcttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 186
|||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||
Sbjct: 132 tgcttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgacc 191
Query: 187 gctgtttggagtgaagggagctctgcatctt 217
||| ||||| ||||||||||||||| ||||
Sbjct: 192 gctcgttggattgaagggagctctgcgtctt 222
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 58 agctgctcgttcatggttcccactgtcccatctcatc 94
|||||||||||||||||||||||| ||||||||||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctcatc 93
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 99.6 bits (50), Expect = 2e-20
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 130 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 189
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 152 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 210
Query: 190 gtttggagtgaagggagctctgcatc 215
|||||| ||||||||||||||||||
Sbjct: 211 ctttggattgaagggagctctgcatc 236
Score = 63.9 bits (32), Expect = 9e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 47 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatc 94
||||||||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 46 atgggtggttccgctgctcgttcatggttcccactatcctatctcatc 93
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 91.7 bits (46), Expect = 4e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 130 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 189
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 141 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 199
Query: 190 gtttggagtgaagggagctctgcatc 215
|||||| ||||||||||||||||||
Sbjct: 200 ctttggattgaagggagctctgcatc 225
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 gctgctcgttcatggttcccactgtcccatctcatc 94
||||||||||||||||||||||| ||| ||||||||
Sbjct: 59 gctgctcgttcatggttcccactatcctatctcatc 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 61.9 bits (31), Expect = 3e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 132 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 191
||||| |||||||||||||||||||| |||||| | || | |||| | ||||| || |
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactcctt-gctgaccactct 155
Query: 192 ttggagtgaagggagctctgcatcttg 218
||||| |||||||||||||||||||||
Sbjct: 156 ttggattgaagggagctctgcatcttg 182
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 42 atctgatgggtggtacagctgctcgttcatggttcccact 81
|||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 38 atctgaagggtgatacagctgcttgttcatggttcccact 77
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 191 tttggagtgaagggagctctgcatctt 217
|||||| ||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
