miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
          Length = 67

 Score =  125 bits (63), Expect = 7e-29
 Identities = 66/67 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  catgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgacg 61
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1  catgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgacg 60

                 
Query: 62 agtttgg 68
          |||||||
Sbjct: 61 agtttgg 67




>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
          persimilis
          Length = 68

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  catgtcgttaaaatgtttgtgaacttatgtattcac-aatcatatcacagccattttgac 60
          |||||||||||||||||||||| |||||||| ||   |||||||||||||||||||||||
Sbjct: 1  catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
          Length = 67

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                      
Query: 2  catgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgacg 61
          |||||||||||||||  ||||| ||||||||||    |||||||||||||||||||||||
Sbjct: 1  catgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgacg 60

                 
Query: 62 agtttgg 68
          |||||||
Sbjct: 61 agtttgg 67




>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
          ananassae
          Length = 68

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 40 tcatatcacagccattttgacgagtttgg 68
          |||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68




>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
          willistoni
          Length = 70

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 40 tcatatcacagccattttgacgagtttgg 68
          |||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttgg 70




>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
          mojavensis
          Length = 69

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 39 atcatatcacagccattttgacgagtttg 67
          |||||||||||||||||||||||||||||
Sbjct: 40 atcatatcacagccattttgacgagtttg 68




>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 77

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 49 tcatatcacagccattttgacgagtttg 76




>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
          gambiae str. PEST
          Length = 71

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70




>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
          Length = 68

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
          Length = 68

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
          Length = 73

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtttg 72




>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 71

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 tcatatcacagccattttgacgagtt 65
          ||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtt 68




>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
          willistoni
          Length = 73

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 tcatatcacagccattttgacgagtt 65
          ||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtt 70




>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
          (red flour beetle)
          Length = 68

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 43 tatcacagccattttgacgagtttgg 68
          ||||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttgg 68




>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
          persimilis
          Length = 68

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 38 aatcatatcacagccattttgacgagttt 66
          |||||||||||||||||||||| ||||||
Sbjct: 38 aatcatatcacagccattttgatgagttt 66




>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
          melanogaster (fruit fly)
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgatgagttt 67




>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
          mojavensis
          Length = 68

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66




>RF00047;mir-2;AADG05000005.1/25311-25372 7460:Apis mellifera
          (honey bee)
          Length = 62

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 40 tcatatcacagccattttgacgagtttgg 68
          |||||||||||||||||||| ||| ||||
Sbjct: 34 tcatatcacagccattttgatgagcttgg 62