miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00726;mir-87;AASW01042897.1/1205-1302 7240:Drosophila simulans
Length = 98
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 3 cacatttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggtt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cacatttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggtt 61
Query: 63 gagcaaaatttcaggtgtgtgagaaatgtgtttagca 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 62 gagcaaaatttcaggtgtgtgagaaatgtgtttagca 98
>RF00726;mir-87;AAPP01015726.1/103266-103169 7217:Drosophila
ananassae
Length = 98
Score = 107 bits (54), Expect = 3e-23
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 65
||||||||||||||||||||||||||||||| | || |||||| | |||||||||||
Sbjct: 5 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 64
Query: 66 caaaatttcaggtgtgtgagaaatgtgtttagca 99
|||||||||||||||||||||||| |||| ||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgttaagca 98
>RF00726;mir-87;AADE01000150.1/47415-47513 46245:Drosophila
pseudoobscura pseudoobscura
Length = 99
Score = 93.7 bits (47), Expect = 4e-19
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatcc-ggttga 64
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 5 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 64
Query: 65 gcaaaatttcaggtgtgtgagaaatgtgtttagca 99
||||||||||||||||||||||||| |||| ||||
Sbjct: 65 gcaaaatttcaggtgtgtgagaaatttgttaagca 99
>RF00726;mir-87;AAQB01006452.1/3553-3454 7260:Drosophila
willistoni
Length = 100
Score = 75.8 bits (38), Expect = 9e-14
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 6 atttcattcgcgcctgtatcttgctgaaccgctgcca-ttatggccaacgat-ccggttg 63
||||||||||||||||||||||||||||||| | ||| || || || | | |||||||
Sbjct: 5 atttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccggttg 64
Query: 64 agcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||
Sbjct: 65 agcaaaatttcaggtgtgtgagaaat 90
>RF00726;mir-87;AAPU01010611.1/255409-255311 7230:Drosophila
mojavensis
Length = 99
Score = 73.8 bits (37), Expect = 4e-13
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 7 tttcattcgcgcctgtatcttgctgaaccgctgccattatggc---caacgatccggttg 63
|||||||||||||||||||||||||||||| | | ||| | | ||| |||||||||
Sbjct: 6 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 63
Query: 64 agcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaat 89
