miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AABU01002774.1/17891638-17891716 7227:Drosophila
          melanogaster (fruit fly)
          Length = 79

 Score =  157 bits (79), Expect = 3e-38
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 7  aatttcccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgt 66
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aatttcccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgt 60

                             
Query: 67 cccggcctatgggcggttt 85
          |||||||||||||||||||
Sbjct: 61 cccggcctatgggcggttt 79




>RF00464;mir-92;AASS01038642.1/1728-1802 7240:Drosophila simulans
          Length = 75

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 73/78 (93%), Gaps = 4/78 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  aatttcccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgt 66
          ||||||||||||||||||| ||||||| |||||||||||||||   ||||||||||||||
Sbjct: 1  aatttcccgtaggacggga-ggtgtca-cgttttgcatttcgat--aacattgcacttgt 56

                            
Query: 67 cccggcctatgggcggtt 84
          ||||||||||||||||||
Sbjct: 57 cccggcctatgggcggtt 74




>RF00464;mir-92;AAPU01011126.1/203266-203187 7230:Drosophila
          mojavensis
          Length = 80

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 17 aggacgggaaggtgtcaacgttttgcatttcgaat-aaacattgcacttgtcccggccta 75
          |||||||||||||||||||||||| | ||| || | ||||||||||||||||||||||||
Sbjct: 11 aggacgggaaggtgtcaacgttttaccttttgattcaaacattgcacttgtcccggccta 70

                    
Query: 76 tgggcggttt 85
          || |||||||
Sbjct: 71 tgagcggttt 80




>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
          (cape rock hyrax)
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 attgcacttgtcccggcctatgg 78
          |||||||||||||||||||||||
Sbjct: 53 attgcacttgtcccggcctatgg 75




>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 attgcacttgtcccggcctatg 77
          ||||||||||||||||||||||
Sbjct: 51 attgcacttgtcccggcctatg 72




>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 attgcacttgtcccggcctatg 77
          ||||||||||||||||||||||
Sbjct: 52 attgcacttgtcccggcctatg 73




>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
          gambiae str. PEST
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 attgcacttgtcccggcctatg 77
          ||||||||||||||||||||||
Sbjct: 48 attgcacttgtcccggcctatg 69