miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
Length = 128
Score = 232 bits (117), Expect = 1e-60
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaatgagatgagatcattgctcggtcgtgctggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gggggcggactgggaacacatgggaatgagatgagatcattgctcggtcgtgctggcctg 71
Query: 61 ggccgtcggcgcgcgttgatcttgcatgtgttctcaggtcgcccccggagggccttc 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ggccgtcggcgcgcgttgatcttgcatgtgttctcaggtcgcccccggagggccttc 128
>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 69.9 bits (35), Expect = 8e-12
Identities = 55/60 (91%), Gaps = 5/60 (8%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaat--gagatgagatcattgctcggtcgtgctggcc 58
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 12 gggggcggactgggaacacatgggaatgagagatgag---attgctcggtcgtgctggcc 68
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 83 tgcatgtgttctcaggtcgcccccggagggccttc 117
||||||||||||||||||||||||| ||||||||
Sbjct: 95 tgcatgtgttctcaggtcgcccccgcggggccttc 129
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tcttgcatgtgttctcaggtcgcccc 105
|||| |||||||||||||||||||||
Sbjct: 101 tctttcatgtgttctcaggtcgcccc 126
