miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00657;mir-184;AAPU01010071.1/6500-6418 7230:Drosophila
          mojavensis
          Length = 83

 Score =  117 bits (59), Expect = 3e-26
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacggag 69
          ||||||||||||||||||||||||| |||||||||||||  |  | ||||||||||||||
Sbjct: 1  gtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactggacggag 60

                                 
Query: 70 aactgataagggctcgtatcacc 92
          |||||||||||||||||||||||
Sbjct: 61 aactgataagggctcgtatcacc 83




>RF00657;mir-184;AAAB01008980.1/6487239-6487319 180454:Anopheles
          gambiae str. PEST
          Length = 81

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacggag 69
          ||||| ||| |||||||||||||| |||||||||||||  |  ||  |||||||||||||
Sbjct: 1  gtgcactcgaacccttatcattctttcgccccgtgtgctttctaa--caactggacggag 58

                       
Query: 70 aactgataagggc 82
          |||||||||||||
Sbjct: 59 aactgataagggc 71




>RF00657;mir-184;ABLF01000583.1/9706-9626 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 81

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 22 ccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaactgataaggg 81
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 13 ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 70

                 
Query: 82 ctcgtat 88
          || ||||
Sbjct: 71 ctggtat 77




>RF00657;mir-184;AAJJ01000543.1/40724-40802 7070:Tribolium
          castaneum (red flour beetle)
          Length = 79

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 56 acaactggacggagaactgataagggct 83
          ||||||||||||||||||||||||||||
Sbjct: 43 acaactggacggagaactgataagggct 70




>RF00657;mir-184;AAZO01006369.1/2415-2497 121224:Pediculus humanus
          corporis (human body louse)
          Length = 83

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 61 tggacggagaactgataagggctcgt 86
          ||||||||||||||||||||||||||
Sbjct: 52 tggacggagaactgataagggctcgt 77




>RF00657;mir-184;AADG05004767.1/16887-16970 7460:Apis mellifera
          (honey bee)
          Length = 84

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 54 agacaactggacggagaactgataagggc 82
          |||| ||||||||||||||||||||||||
Sbjct: 46 agacgactggacggagaactgataagggc 74




>RF00657;mir-184;AAGE02019030.1/3534-3452 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                      
Query: 14 attcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaact 73
          ||||||||||||||||||||  ||||||||||    ||   | | |||||||||||||||
Sbjct: 5  attcgtacccttatcattcttgcgccccgtgttatattgttggcgactggacggagaact 64

                   
Query: 74 gataagggc 82
          |||||||||
Sbjct: 65 gataagggc 73




>RF00657;mir-184;AAGJ02116195.1/16137-16046
          7668:Strongylocentrotus purpuratus
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ctggacggagaactgataagggct 83
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>RF00657;mir-184;AABS01000135.1/138381-138283 7719:Ciona
          intestinalis
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 61 tggacggagaactgataagggctc 84
          ||||||||||||||||||||||||
Sbjct: 68 tggacggagaactgataagggctc 91




>RF00657;mir-184;BAAB01083504.1/1731-1651 7091:Bombyx mori
          (domestic silkworm)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 48 actggacggagaactgataagggc 71




>RF00657;mir-184;AC185288.4/52827-52910 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 51 actggacggagaactgataagggc 74




>RF00657;mir-184;ABJB010201781.1/2990-3072 6945:Ixodes scapularis
          (black-legged tick)
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ctggacggagaactgataagggct 83
          ||||||||||||||||||||||||
Sbjct: 51 ctggacggagaactgataagggct 74




>RF00657;mir-184;AACT01014507.1/19083-19005 51511:Ciona savignyi
          Length = 79

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 tggacggagaactgataagggct 83
          |||||||||||||||||||||||
Sbjct: 48 tggacggagaactgataagggct 70




>RF00657;mir-184;AAVX01446026.1/144-63 7868:Callorhinchus milii
          (ghost shark)
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 tggacggagaactgataagggct 83
          |||||||||||||||||||||||
Sbjct: 51 tggacggagaactgataagggct 73




>RF00657;mir-184;ABEP02024042.1/7891-7807 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 60 ctggacggagaactgataagggc 82
          |||||||||||||||||||||||
Sbjct: 53 ctggacggagaactgataagggc 75




>RF00657;mir-184;AANN01245614.1/108-185 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 78

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 60 ctggacggagaactgataaggg 81
          ||||||||||||||||||||||
Sbjct: 46 ctggacggagaactgataaggg 67




>RF00657;mir-184;CR352253.9/159514-159598 7955:Danio rerio
          (zebrafish)
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75




>RF00657;mir-184;CR356246.5/16955-16871 7955:Danio rerio
          (zebrafish)
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75




>RF00657;mir-184;AANH01000282.1/6070-5986 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75




>RF00657;mir-184;BAAF04083164.1/7464-7548 8090:Oryzias latipes
          (Japanese medaka)
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75