miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 170 bits (86), Expect = 2e-42
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 10 tgatggttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccag 69
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tgatggttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccag 60
Query: 70 gaatcaaacatattattactgtgaccctcg 99
||||||||||||||||||||||||||||||
Sbjct: 61 gaatcaaacatattattactgtgaccctcg 90
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 147 bits (74), Expect = 3e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatca 75
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 ttccagtgagatatgtttgatattcttggttgttacattcaaaagttcacccaggaatca 66
Query: 76 aacatattattactgtga 93
||||||||||||||||||
Sbjct: 67 aacatattattactgtga 84
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
|||| ||||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 75 aaacatattattactgtg 92
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgtt-tcattcaaaagttcacccaggaatcaaaca 79
||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 71
Query: 80 tattattactgtgac 94
||||||||| |||||
Sbjct: 72 tattattaccgtgac 86
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 22 tgagatatgtttgatattcttggttgttt 50
|||||||||||||||||||||||||||||
Sbjct: 13 tgagatatgtttgatattcttggttgttt 41
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgtt 49
|||||||||||||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
||||||||||||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttt--tttaaagaatcgaccaggaatcaaacatatt 72
Query: 84 atta 87
||||
Sbjct: 73 atta 76
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 gagatatgtttgatattcttggttgttt 50
||||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgttt 42
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
||||||||||||||||||||||||| | || | ||||||||||| |||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 70
Query: 84 atta 87
||||
Sbjct: 71 atta 74
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 gagatatgtttgatattcttggttgt 48
||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgt 40
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 ccaggaatcaaacatattattac 88
|||||||||||||||||||||||
Sbjct: 53 ccaggaatcaaacatattattac 75
