miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
          Length = 95

 Score =  143 bits (72), Expect = 5e-34
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                      
Query: 8  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 67
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7  cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66

                                  
Query: 68 cggctattgtaagaggccatagaa 91
          ||||||||||||||| ||| ||||
Sbjct: 67 cggctattgtaagagaccagagaa 90




>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
          (honey bee)
          Length = 95

 Score =  115 bits (58), Expect = 1e-25
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 72
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 71

            
Query: 73 at 74
          ||
Sbjct: 72 at 73




>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
          grimshawi
          Length = 97

 Score =  109 bits (55), Expect = 7e-24
 Identities = 73/78 (93%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 64
          |||||||| ||||||||||||||||||||||||||| | ||  |||||||||||||||||
Sbjct: 6  gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 65

                            
Query: 65 cagcggctattgtaagag 82
          ||||||||||||||||||
Sbjct: 66 cagcggctattgtaagag 83




>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 95

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 70
          ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 68

                 
Query: 71 ctattgt 77
          |||||||
Sbjct: 69 ctattgt 75




>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
          (domestic silkworm)
          Length = 98

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 60/66 (90%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 14 gcagctgctggccactgcacaagattag---acttaagactcttgtgcgtgtgacagcgg 70
          ||||||||||||||||||||||||||||   | || | ||||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 72

                
Query: 71 ctattg 76
          ||||||
Sbjct: 73 ctattg 78




>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
          gambiae str. PEST
          Length = 94

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 70
          ||||||||||||| ||||||||||||||||||  |  ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacgg 68

               
Query: 71 ctatt 75
          |||||
Sbjct: 69 ctatt 73




>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
          castaneum (red flour beetle)
          Length = 99

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 69
          |||||||||||| | |||||||||||||||    |||  |||||||||||||||||||||
Sbjct: 12 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 71

                  
Query: 70 gctattgt 77
          ||||||||
Sbjct: 72 gctattgt 79




>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
          (black-legged tick)
          Length = 79

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 51 tcttgtgcgtgtgacagcggctattg 76
          ||||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67




>RF00679;mir-210;AAZO01006118.1/235-143 121224:Pediculus humanus
          corporis (human body louse)
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 43/48 (89%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                          
Query: 14 gcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 61
          ||||||||||| ||| || |||||||||  ||||||||||||||||||
Sbjct: 13 gcagctgctggacacagcccaagattagt-ttaagactcttgtgcgtg 59