miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
melanogaster (fruit fly)
Length = 94
Score = 186 bits (94), Expect = 4e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 6 cgaagtctttttaccatcagcgaggtatagagttcctacgttcctatattcagtcgtagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaagtctttttaccatcagcgaggtatagagttcctacgttcctatattcagtcgtagg 60
Query: 66 aacttaataccgtgctcttggaggactgtcgacc 99
||||||||||||||||||||||||||||||||||
Sbjct: 61 aacttaataccgtgctcttggaggactgtcgacc 94
>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
pseudoobscura pseudoobscura
Length = 95
Score = 101 bits (51), Expect = 2e-21
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 cgaagtctttttaccatcagcgaggtatagagttcctacgttcc-tatattcagtcgtag 64
||||| || |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct: 1 cgaagcctctttaccatcagcgaggtatagagttcctacgtgccgtatccaaagtcgtag 60
Query: 65 gaacttaataccgtgctcttggaggactgtc 95
||||||||||||||||||||||||| |||||
Sbjct: 61 gaacttaataccgtgctcttggagggctgtc 91
>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
mojavensis
Length = 96
Score = 93.7 bits (47), Expect = 4e-19
Identities = 86/97 (88%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 6 cgaagtctttttaccatcagcgaggtatagagttcctacgttcctatattca---gtcgt 62
|||||||| | |||||||||||||||||||||||||||||| | || | || |||||
Sbjct: 1 cgaagtctatataccatcagcgaggtatagagttcctacgtgcaaat-tgcaatagtcgt 59
Query: 63 aggaacttaataccgtgctcttggaggactgtcgacc 99
||||||||||||||||||||||||||| |||||||||
Sbjct: 60 aggaacttaataccgtgctcttggagggctgtcgacc 96
>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
virilis
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 13 tttttaccatcagcgaggtatagagttcctacgttc-ctatattcagtcgtaggaactta 71
||||| |||||||||||||||||||||||||||||| | ||| | ||||||||||||
Sbjct: 6 tttttgccatcagcgaggtatagagttcctacgttcaatttatatactcgtaggaacttc 65
Query: 72 ataccgtgctcttgga 87
||||||||||||||||
Sbjct: 66 ataccgtgctcttgga 81
>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
(yellow fever mosquito)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 19 ccatcagcgaggtatagagttcctacgtt 47
|||||||||||||||||||||||||||||
Sbjct: 12 ccatcagcgaggtatagagttcctacgtt 40
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgg 86
|||||||||| |||||||||||||||
Sbjct: 56 gtaggaacttcataccgtgctcttgg 81
>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
gambiae S
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 ccatcagcgaggtatagagttcctacg 45
|||||||||||||||||||||||||||
Sbjct: 12 ccatcagcgaggtatagagttcctacg 38
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgga 87
|||||||||| ||||||||||||||||
Sbjct: 57 gtaggaacttcataccgtgctcttgga 83
>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
(pea aphid)
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agcgaggtatagagttcctacgttc 48
|||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgttc 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tcgtaggaacttaataccgtgctcttgga 87
|||||||||||| ||||||||||||||||
Sbjct: 57 tcgtaggaacttcataccgtgctcttgga 85
>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
corporis (human body louse)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 cagcgaggtatagagttcctacgt 46
||||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgga 87
|||||||||| ||||||||||||||||
Sbjct: 52 gtaggaacttcataccgtgctcttgga 78
>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
(jewel wasp)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 cagcgaggtatagagttcctacgt 46
||||||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgt 40
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgga 87
|||||||||| ||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
(honey bee)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 cagcgaggtatagagttcctacgt 46
||||||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgt 40
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgga 87
|||||||||| ||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
silkworm)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 agcgaggtatagagttcctacgt 46
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgg 86
|||||||||| |||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgg 76
>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 agcgaggtatagagttcctacgt 46
|||||||||||||||||||||||
Sbjct: 15 agcgaggtatagagttcctacgt 37
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtaggaacttaataccgtgctcttgga 87
|||||||||| ||||||||||||||||
Sbjct: 50 gtaggaacttcataccgtgctcttgga 76
>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 taggaacttaataccgtgctcttgga 87
||||||||| ||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgga 85
>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcagcgaggtatagagttccta 43
||||||||||||||||||||||
Sbjct: 14 tcagcgaggtatagagttccta 35
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 taggaacttaataccgtgctcttgga 87
||||||||| ||||||||||||||||
Sbjct: 58 taggaacttcataccgtgctcttgga 83
>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
gambiae M
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 taggaacttaataccgtgctcttgga 87
||||||||| ||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgga 88
>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
S
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 taggaacttaataccgtgctcttgga 87
||||||||| ||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgga 88
