miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00730;mir-277;AANI01014607.1/369382-369282 7244:Drosophila
           virilis
          Length = 101

 Score =  149 bits (75), Expect = 8e-36
 Identities = 91/95 (95%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaa-gcatgtaaatgc 65
           |||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||
Sbjct: 7   gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaaagcttgtaaatgc 66

                                              
Query: 66  actatctggtacgacattccagaacgtacaatctt 100
           |||||||||||||||||||||||||||||||||||
Sbjct: 67  actatctggtacgacattccagaacgtacaatctt 101




>RF00730;mir-277;AAGE02012646.1/3549-3655 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 107

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 57 tgtaaatgcactatctggtacgacattccagaa 89
          |||||||||||||||||||||||||||||||||
Sbjct: 64 tgtaaatgcactatctggtacgacattccagaa 96




>RF00730;mir-277;ABKP02013266.1/5414-5519 377271:Anopheles gambiae
          M
          Length = 106

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 57 tgtaaatgcactatctggtacgacattccagaa 89
          |||||||||||||||||||||||||||||||||
Sbjct: 63 tgtaaatgcactatctggtacgacattccagaa 95




>RF00730;mir-277;AAZO01001184.1/8581-8481 121224:Pediculus humanus
          corporis (human body louse)
          Length = 101

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 tgtaaatgcactatctggtacgacatt 83
          |||||||||||||||||||||||||||
Sbjct: 58 tgtaaatgcactatctggtacgacatt 84




>RF00730;mir-277;ABLF01050542.1/1-88 7029:Acyrthosiphon pisum (pea
          aphid)
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 55 catgtaaatgcactatctggtacgaca 81
          |||||||||||||||||||||||||||
Sbjct: 58 catgtaaatgcactatctggtacgaca 84




>RF00730;mir-277;BAAB01014298.1/12021-12140 7091:Bombyx mori
           (domestic silkworm)
          Length = 120

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 57  tgtaaatgcactatctggtacgacat 82
           ||||||||||||||||||||||||||
Sbjct: 77  tgtaaatgcactatctggtacgacat 102




>RF00730;mir-277;AAZX01003771.1/6490-6590 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>RF00730;mir-277;AADG05001988.1/82689-82784 7460:Apis mellifera
          (honey bee)
          Length = 96

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 53 tgtaaatgcactatctggtacgacat 78




>RF00730;mir-277;AAJJ01000475.1/30018-29916 7070:Tribolium
          castaneum (red flour beetle)
          Length = 103

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 tgtaaatgcactatctggtacgaca 81
          |||||||||||||||||||||||||
Sbjct: 60 tgtaaatgcactatctggtacgaca 84