miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 117 bits (59), Expect = 5e-26
Identities = 105/118 (88%), Gaps = 8/118 (6%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggcagcttcaact 79
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactgcatctctaagagga---gcagcttgaact 57
Query: 80 cctccacccgcatcagcaggtgcatgcagttcaataaagctgtgggaaactgcagaga 137
||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 58 -ctctacctgcatgagcagg----tgcagttcaataaagctgtgggaaactgcagaga 110
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||||||||||||
Sbjct: 87 gcagttcaataaagctgtgggaaactgcagaga 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactgca 33
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||| ||||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagaga 155
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactgcatct 55
||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 104 tgcagttcaataaagctgtgggaaactgcagaga 137
||||||||||||||||||||||||| | ||||||
Sbjct: 84 tgcagttcaataaagctgtgggaaattacagaga 117
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||| ||||||||
Sbjct: 75 gcagttcaataaagctgtgggaaattgcagaga 107
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatct 55
||||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatct 36
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 tgtgatcttccacagctttcttgaactg 50
||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactg 31
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactg 50
||||||| |||||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 gtgatcttccacagctttcttgaactg 50
|||||||||||||||||||||||||||
Sbjct: 5 gtgatcttccacagctttcttgaactg 31
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
trichocarpa
Length = 126
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
