miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
          Length = 95

 Score =  180 bits (91), Expect = 2e-45
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   tcatactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtattt 65
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatactgctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtattt 60

                                              
Query: 66  gtgactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||||
Sbjct: 61  gtgactagatccacactcattaataacggtagttc 95




>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
           willistoni
          Length = 94

 Score =  127 bits (64), Expect = 3e-29
 Identities = 86/92 (93%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtg 68
           ||||||||||||||||| ||| ||||||||||||||||||| | | | ||||||||||||
Sbjct: 4   tactactgtttttagtgagtgagggtccagtgtttcacattaaatat-ttagtatttgtg 62

                                           
Query: 69  actagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||||||||||||||
Sbjct: 63  actagatccacactcattaataacggtagttc 94




>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila virilis
          Length = 96

 Score =  113 bits (57), Expect = 4e-25
 Identities = 85/93 (91%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
           ||||||||||||||||| ||| |||||||||||||||||||  |||| | | ||||||||
Sbjct: 4   tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 63

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||| |||||||||||
Sbjct: 64  gactagatccacactcattaacaacggtagttc 96




>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
          gambiae M
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 64 ttgtgactagatccacactcattaat 89
          ||||||||||||||||||||||||||
Sbjct: 55 ttgtgactagatccacactcattaat 80




>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
          (honey bee)
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 64 ttgtgactagatccacactcattaa 88
          |||||||||||||||||||||||||
Sbjct: 50 ttgtgactagatccacactcattaa 74




>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 51 tgtgactagatccacactcattaa 74




>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81




>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81




>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 gtgactagatccacactcattaa 88
          |||||||||||||||||||||||
Sbjct: 55 gtgactagatccacactcattaa 77