miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
Length = 95
Score = 180 bits (91), Expect = 2e-45
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 6 tcatactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtattt 65
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatactgctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtattt 60
Query: 66 gtgactagatccacactcattaataacggtagttc 100
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgactagatccacactcattaataacggtagttc 95
>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
willistoni
Length = 94
Score = 127 bits (64), Expect = 3e-29
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtg 68
||||||||||||||||| ||| ||||||||||||||||||| | | | ||||||||||||
Sbjct: 4 tactactgtttttagtgagtgagggtccagtgtttcacattaaatat-ttagtatttgtg 62
Query: 69 actagatccacactcattaataacggtagttc 100
||||||||||||||||||||||||||||||||
Sbjct: 63 actagatccacactcattaataacggtagttc 94
>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila virilis
Length = 96
Score = 113 bits (57), Expect = 4e-25
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
||||||||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 4 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 63
Query: 68 gactagatccacactcattaataacggtagttc 100
||||||||||||||||||||| |||||||||||
Sbjct: 64 gactagatccacactcattaacaacggtagttc 96
>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
gambiae M
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ttgtgactagatccacactcattaat 89
||||||||||||||||||||||||||
Sbjct: 55 ttgtgactagatccacactcattaat 80
>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 ttgtgactagatccacactcattaa 88
|||||||||||||||||||||||||
Sbjct: 50 ttgtgactagatccacactcattaa 74
>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
vitripennis (jewel wasp)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgactagatccacactcattaa 88
||||||||||||||||||||||||
Sbjct: 51 tgtgactagatccacactcattaa 74
>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgactagatccacactcattaa 88
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgactagatccacactcattaa 88
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 gtgactagatccacactcattaa 88
|||||||||||||||||||||||
Sbjct: 55 gtgactagatccacactcattaa 77
