miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00747;mir-283;AAQB01006319.1/8842-8742 7260:Drosophila willistoni
          Length = 101

 Score =  149 bits (75), Expect = 8e-36
 Identities = 90/94 (95%), Gaps = 2/94 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   attctcaaaggtaaatatcagctggtaattctgggagctaagcctaaata--tgaaacac 66
           |||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||||
Sbjct: 7   attctcaaaggtaaatatcagctggtaattctgggagctatgcctagatatttgaaacac 66

                                             
Query: 67  tcggaatttcagttggtatcgacttttttgaatt 100
           ||||||||||||||||||||||||||||||||||
Sbjct: 67  tcggaatttcagttggtatcgacttttttgaatt 100




>RF00747;mir-283;AAPU01008564.1/40966-41063 7230:Drosophila
           mojavensis
          Length = 98

 Score =  131 bits (66), Expect = 2e-30
 Identities = 88/94 (93%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 66
           |||||||||||||||||||||||||||||||||||||||| | |||  ||||||||||||
Sbjct: 5   cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 63

                                             
Query: 67  tcggaatttcagttggtatcgacttttttgaatt 100
           |||||||||||||||||||  |||||||||||||
Sbjct: 64  tcggaatttcagttggtatatacttttttgaatt 97




>RF00747;mir-283;ABKQ02004749.1/31643-31736 377270:Anopheles
          gambiae S
          Length = 94

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 aaaggtaaatatcagctggtaattct 40
          ||||||||||||||||||||||||||
Sbjct: 11 aaaggtaaatatcagctggtaattct 36




>RF00747;mir-283;AAWU01005348.1/2399-2495 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 97

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 aaaggtaaatatcagctggtaattctggg 43
          |||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39




>RF00747;mir-283;AAGE02004323.1/32429-32333 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 97

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 aaaggtaaatatcagctggtaattctggg 43
          |||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39




>RF00747;mir-283;BAAB01105947.1/481-397 7091:Bombyx mori (domestic
          silkworm)
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 taaatatcagctggtaattctggg 43
          ||||||||||||||||||||||||
Sbjct: 16 taaatatcagctggtaattctggg 39




>RF00747;mir-283;AAZX01000006.1/24204-24295 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;AADG05008150.1/23792-23703 7460:Apis mellifera
          (honey bee)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;AAJJ01001605.1/25781-25866 7070:Tribolium
          castaneum (red flour beetle)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 17 aaatatcagctggtaattctggg 39