miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00853;mir-304;AAFS01000251.1/56138-56051 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88
>RF00853;mir-304;AAPU01008564.1/42415-42503 7230:Drosophila
mojavensis
Length = 89
Score = 121 bits (61), Expect = 2e-27
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggttta-agccatttgacgcactca 59
|||||||||| ||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaattggagattgctcgagactgc 88
|||||||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>RF00853;mir-304;AAQB01006319.1/7240-7152 7260:Drosophila
willistoni
Length = 89
Score = 105 bits (53), Expect = 9e-23
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcggtttaag-ccatttgacgcactcacttt 63
|||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaattggagattgctcgaga 84
|||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85
