miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 212 bits (107), Expect = 1e-54
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 19 ccttgccgtctcccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgc 78
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgccgtcttccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgc 60
Query: 79 tgaaattccggtcgatcccaagaggcgcagttcaataaagctgtgggaaactgcagaga 137
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaattccggtcgatcccaagaggcgcagttcaataaagctgtgggaaactgcagaga 119
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||||||||||||
Sbjct: 78 gcagttcaataaagctgtgggaaactgcagaga 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 ccttgccgtctcccacagctttcttgaactgcatgc 54
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ccttgccgtcttccacagctttcttgaactgcatgc 36
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||| ||||||||
Sbjct: 75 gcagttcaataaagctgtgggaaattgcagaga 107
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa Japonica
Group
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||| ||||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagaga 155
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa Indica
Group
Length = 117
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagaga 137
|||||||||||||||||||||||| | ||||||
Sbjct: 85 gcagttcaataaagctgtgggaaattacagaga 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 gtctcccacagctttcttgaactgcat 52
|||| ||||||||||||||||||||||
Sbjct: 8 gtcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcatg 53
|||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcatg 35
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 27 tctcccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 124 tctcccacagctttcttgaact 103
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
