miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00807;mir-314;AAFS01000446.1/64778-64866 46245:Drosophila
pseudoobscura pseudoobscura
Length = 89
Score = 123 bits (62), Expect = 4e-28
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tcgtaacttgtgtggcttcgaacttacctagttgaggaaaactcccatgtcggattttgt 60
|||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||
Sbjct: 1 tcgtaacttgtgtggcttcgaatgtacctagttgaggaaaactccgaaat-ggattttgt 59
Query: 61 tacctctggtattcgagccaataagttcgg 90
||||||||||||||||||||||||||||||
Sbjct: 60 tacctctggtattcgagccaataagttcgg 89
>RF00807;mir-314;AAPP01019289.1/431088-431175 7217:Drosophila
ananassae
Length = 88
Score = 109 bits (55), Expect = 6e-24
Identities = 82/90 (91%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 tcgtaacttgtgtggcttcgaacttacctagttgaggaaaactcccatgtcggattttgt 60
|||||||||||||||||||||| ||||||||||||||||| || | | |||||||||
Sbjct: 1 tcgtaacttgtgtggcttcgaatgtacctagttgaggaaaaatc--agtttggattttgt 58
Query: 61 tacctctggtattcgagccaataagttcgg 90
||||||||||||||||||||||||||||||
Sbjct: 59 tacctctggtattcgagccaataagttcgg 88
>RF00807;mir-314;AANI01017486.1/342740-342830 7244:Drosophila
virilis
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 52 ggattttgttacctctggtattcgagccaataagttcgg 90
|||||||||| ||| ||||||||||||||||||||||||
Sbjct: 53 ggattttgttgcctttggtattcgagccaataagttcgg 91
>RF00807;mir-314;AAPU01011627.1/156896-156990 7230:Drosophila
mojavensis
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tggtattcgagccaataagttcgg 90
||||||||||||||||||||||||
Sbjct: 72 tggtattcgagccaataagttcgg 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgtaacttgtgtggcttcgaa 22
||||||||||||||||||||||
Sbjct: 1 tcgtaacttgtgtggcttcgaa 22
>RF00807;mir-314;AAPT01020574.1/773332-773257 7222:Drosophila
grimshawi
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 ggtattcgagccaataagttcgg 90
|||||||||||||||||||||||
Sbjct: 54 ggtattcgagccaataagttcgg 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgtaacttgtgtggcttcgaa 22
||||||||||||||||||||||
Sbjct: 1 tcgtaacttgtgtggcttcgaa 22
