miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
          Length = 91

 Score =  178 bits (90), Expect = 8e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                        
Query: 61 acagctggtggtatccagtggccgtttggc 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90




>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
          persimilis
          Length = 91

 Score =  121 bits (61), Expect = 2e-27
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
          |||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 2  tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 61

                                   
Query: 62 cagctggtggtatccagtggccgtt 86
          |||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccaatggccgtt 86




>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
          virilis
          Length = 89

 Score =  107 bits (54), Expect = 2e-23
 Identities = 69/73 (94%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
          ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 71

                       
Query: 74 tccagtggccgtt 86
          |||||||||||||
Sbjct: 72 tccagtggccgtt 84




>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
          grimshawi
          Length = 92

 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                      
Query: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
          |||||||||||||||||||    || ||||||||||||||||||||||||||||||||||
Sbjct: 24 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 83

                  
Query: 83 cgtttggc 90
          ||||||||
Sbjct: 84 cgtttggc 91




>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
          mojavensis
          Length = 89

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 65/73 (89%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
          |||||||||||||||||||||||||| |  | ||   |||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtggta 71

                       
Query: 74 tccagtggccgtt 86
          ||||| |||||||
Sbjct: 72 tccagaggccgtt 84




>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 60/70 (85%), Gaps = 5/70 (7%)
 Strand = Plus / Plus

                                                                      
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
          |||||||||||||||||||||||| ||    |  || | |||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 70

                    
Query: 75 c-cagtggcc 83
          | ||||||||
Sbjct: 71 ctcagtggcc 80




>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
          corporis (human body louse)
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 53 aagtgaacacagctggtggtatc 75
          |||||||||||||||||||||||
Sbjct: 62 aagtgaacacagctggtggtatc 84




>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 109

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatc 92




>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
          (domestic silkworm)
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatc 72




>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
          castaneum (red flour beetle)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 49 agtgaacacagctggtggtatc 70