miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagtcgtttt 42
|||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcgtttt 36
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagtc 37
|||||||||||||||||||||||||||
Sbjct: 77 tactccctccgtcccaaattataagtc 51
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataagtc 37
||||||||||||| ||||||||||||||
Sbjct: 4 ctactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagtcgtt 40
|||||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcgtt 34
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataagtcgtttt 42
||||||||||||| |||||||||||| ||||||
Sbjct: 106 ctactccctccgttccaaattataagacgtttt 74
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataagtcgtttt 42
||||||||||||| ||||||| |||||||||||
Sbjct: 4 ctactccctccgttccaaattgtaagtcgtttt 36
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataagtcg 38
||||||||||||| |||||||||||||||
Sbjct: 155 ctactccctccgttccaaattataagtcg 127
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 cctactccctccgtcccaaattataagtc 37
|||||||||||||| ||||||||||||||
Sbjct: 156 cctactccctccgttccaaattataagtc 128
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagtcg 38
|||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcg 32
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagtcgtttt 42
|||||||||||||||||| |||||| ||||||
Sbjct: 152 tactccctccgtcccaaactataagacgtttt 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataagt 36
||||||||||||| |||||||||||||
Sbjct: 4 ctactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagtcg 38
|||||||||||| |||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtcg 127
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagtcgtttt 42
|||||||||||| |||||||||||| ||||||
Sbjct: 111 tactccctccgttccaaattataagacgtttt 80
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagtcg 38
|||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcg 32
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 56 gctatgcacctagaaaagacaaaaccactta 86
|||||||||||||||||| |||||| |||||
Sbjct: 56 gctatgcacctagaaaagccaaaacaactta 26
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataagtcgtt 40
||||||||||||| ||||||| |||||||||
Sbjct: 4 ctactccctccgttccaaattgtaagtcgtt 34
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 48 catagaaagctatgcacctagaaaagacaaaaccactta 86
||||| |||||||| ||||||||||| |||||| |||||
Sbjct: 39 catagcaagctatgtacctagaaaagccaaaacgactta 1
>RF00906;MIR1122;AP008216.1/11618978-11618822 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 cctactccctccgtcccaaattataag 35
|||||||||||||||||||| ||||||
Sbjct: 155 cctactccctccgtcccaaaatataag 129
>RF00906;MIR1122;AP008207.1/42089526-42089634 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 cctactccctccgtcccaaattataag 35
|||||||||||||||||||| ||||||
Sbjct: 3 cctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02023828.1/150-266 39946:Oryza sativa Indica
Group
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 cctactccctccgtcccaaattataag 35
|||||||||||||||||| ||||||||
Sbjct: 3 cctactccctccgtcccatattataag 29
>RF01058;MIR806;AP003911.3/91791-91550 39947:Oryza sativa Japonica
Group
Length = 242
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 242 ctactccctccgtcccaaaatataag 217
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 cctactccctccgtcccaaattataagtcg 38
|||||||| ||||| |||||||||||||||
Sbjct: 156 cctactccttccgttccaaattataagtcg 127
>RF00906;MIR1122;AY761662.1/398-280 4558:Sorghum bicolor (sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ctccctccgtcccaaattataagtcgtttt 42
|||||||| |||||||||||| ||||||||
Sbjct: 113 ctccctccatcccaaattataggtcgtttt 84
>RF00906;MIR1122;AF325196.1/34233-34141 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 90 ctactccctccgtcccaaaatataag 65
>RF00906;MIR1122;AP008209.1/35984076-35984203 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 125 ctactccctccgtcccaaaatataag 100
>RF00906;MIR1122;AAAA02016488.1/7317-7428 39946:Oryza sativa Indica
Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 109 ctactccctccgtcccaaaatataag 84
>RF00906;MIR1122;AACV01002075.1/518-362 39947:Oryza sativa Japonica
Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 154 ctactccctccgtcccaaaatataag 129
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtcccaaaatataagt 30
>RF00906;MIR1122;AAAA02035134.1/58354-58198 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 154 ctactccctccgtcccaaaatataag 129
>RF00906;MIR1122;AAAA02003301.1/35949-35819 39946:Oryza sativa
Indica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 128 ctactccctccgtcccaaaatataag 103
>RF00906;MIR1122;AAAA02013497.1/8427-8281 39946:Oryza sativa
Indica Group
Length = 147
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02003606.1/3920-3764 39946:Oryza sativa Indica
Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 154 ctactccctccgtcccaaaatataag 129
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 132 ctactccctccgtcccaaaatataag 107
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 106 tactccctccgtcccaaaatataagt 81
>RF00906;MIR1122;AP002744.2/5581-5711 39947:Oryza sativa Japonica
Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 128 ctactccctccgtcccaaaatataag 103
>RF00906;MIR1122;AAAA02004166.1/9974-9858 39946:Oryza sativa
Indica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AP008209.1/8919908-8919797 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 109 ctactccctccgtcccaaaatataag 84
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtcccaaaatataagt 30
>RF00906;MIR1122;AC130724.2/11285-11174 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AP003410.4/123214-123103 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 109 ctactccctccgtcccaaaatataag 84
>RF00906;MIR1122;AP008213.1/3607812-3607697 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 113 ctactccctccgtcccaaaatataag 88
>RF00906;MIR1122;AAAA02009296.1/3612-3735 39946:Oryza sativa Indica
Group
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 121 ctactccctccgtcccaaaatataag 96
>RF00906;MIR1122;AP008216.1/22670503-22670626 39947:Oryza sativa
Japonica Group
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 121 ctactccctccgtcccaaaatataag 96
>RF00906;MIR1122;AL662959.3/95147-95258 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02028032.1/2328-2217 39946:Oryza sativa Indica
Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 109 ctactccctccgtcccaaaatataag 84
>RF00906;MIR1122;AAAA02000569.1/43583-43659 39946:Oryza sativa
Indica Group
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AL662977.3/22853-22707 39947:Oryza sativa Japonica
Group
Length = 147
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 144 ctactccctccgtcccaaaatataag 119
>RF00906;MIR1122;AC138197.3/31250-31161 39947:Oryza sativa
Japonica Group
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 87 ctactccctccgtcccaaaatataag 62
>RF00906;MIR1122;AACV01025228.1/13353-13452 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AACV01024802.1/12019-12139 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 gcctactccctccgtcccaaattata 33
||||||||||||||||||||| ||||
Sbjct: 120 gcctactccctccgtcccaaaatata 95
>RF00906;MIR1122;AACV01012472.1/10900-10769 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 129 ctactccctccgtcccaaaatataag 104
>RF00906;MIR1122;AK242602.1/3859-3737 39947:Oryza sativa Japonica
Group
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 120 ctactccctccgtcccaaaatataag 95
>RF00906;MIR1122;AC078829.10/4988-5143 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 153 ctactccctccgtcccaaaatataag 128
>RF00906;MIR1122;AAAA02034107.1/9075-8937 39946:Oryza sativa Indica
Group
Length = 139
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 136 ctactccctccgtcccaaaatataag 111
>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 108 tactccctccgtcccaaaatataagt 83
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 96 tactccctccgtcccaaaatataagt 71
>RF00906;MIR1122;AAAA02018654.1/14883-14772 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattataagt 36
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtcccaaaatataagt 30
>RF00906;MIR1122;AAAA02005722.1/24068-24224 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 154 ctactccctccgtcccaaaatataag 129
>RF00906;MIR1122;AL731597.3/103356-103467 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtcccaaattataag 35
||||||||||||||||||| ||||||
Sbjct: 109 ctactccctccgtcccaaaatataag 84
