miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 206 bits (104), Expect = 7e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 34 caagggcggaggtattggcgcgcctcaatccgaaggcgtggctgatagattggcgcggca 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagggcggaggtattggcgcgcctcaatccgaaggcgtggctgatagattggcgcggca 60
Query: 94 gccatgttcttggattgagccgcgtcaatatctccccttgcctg 137
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccatgttcttggattgagccgcgtcaatatctccccttgcctg 104
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 135 bits (68), Expect = 2e-31
Identities = 88/94 (93%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 41 ggaggtattggcgcgcctcaatccgaaggcgtggctgatagattggcgcggcagccatgt 100
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 8 ggaggtattggcgcgcctcaatccgaaggcgtggctgat---ttggcatggcagccatgt 64
Query: 101 tcttggattgagccgcgtcaatatctccccttgc 134
|||||||||||||||||||||||||||| |||||
Sbjct: 65 tcttggattgagccgcgtcaatatctccgcttgc 98
>RF00643;MIR171_1;AC147962.1/85803-85682 39947:Oryza sativa Japonica
Group
Length = 122
Score = 65.9 bits (33), Expect = 2e-10
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 91 gcagccatgtt-cttggattgagccgcgtcaatatctccccttgc 134
||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 75 gcagccatgtttcttggattgagccgcgtcaatatctctccttgc 119
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 42 gaggtattggcgcgcctcaatccgaaggcgtggctgat 79
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 9 gaggtattggcgtgcctcaatccgaaggcatggctgat 46
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 agccatgttcttggattgagccgcgtcaatatctcc 128
||||||||| | |||||||||||||||||||||||
Sbjct: 60 agccatgttttctgattgagccgcgtcaatatctcc 95
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 agccatgttcttggattgagccgcgtcaatatctcc 128
|||||||| || |||||||||||||||||||||||
Sbjct: 61 agccatgtaatttgattgagccgcgtcaatatctcc 96
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 agccatgttcttggattgagccgcgtcaatatctcc 128
|||||||| || |||||||||||||||||||||||
Sbjct: 59 agccatgtgatttgattgagccgcgtcaatatctcc 94
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 cagccatgttcttggattgagccgcgtcaatatct 126
||||||||| || |||||||||||||||||||||
Sbjct: 61 cagccatgtagtttgattgagccgcgtcaatatct 95
