miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1 tcgtgttacgtatactgaaggtataccggataggatacactcaggatacattcagtatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcgtgttacgtatactgaaggtataccggataggatacactcaggatacattcagtatac 17
Query: 61 gtttacga 68
|| |||||
Sbjct: 16 gtatacga 9
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 93.7 bits (47), Expect = 3e-19
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 4 tgttacgtatactgaaggtataccggataggatacactcaggatacattcagtatacgt 62
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggacagaaaacactcaggatacattcagtatacgt 15
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 4 tgttacgtatactgaaggtataccggataggatacactcaggatacattcagtatacgtt 63
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggataagtagcactcaggatacattcagtatacgtt 14
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand = Plus / Minus
Query: 4 tgttacgtatactgaaggtataccggatagga----tacactcaggatacattcagtata 59
||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 77 tgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtata 18
Query: 60 cgt 62
|||
Sbjct: 17 cgt 15
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 5 gttacgtatactgaaggtataccgg-ataggatacactcaggatacattcagtatacg 61
||||||||||||||||||||||||| | | | |||||||||||||| ||||||||||
Sbjct: 73 gttacgtatactgaaggtataccggaaaattaaacactcaggatacactcagtatacg 16
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 4 tgttacgtatactgaaggtataccgga 30
|||||||||||||||||||||||||||
Sbjct: 79 tgttacgtatactgaaggtataccgga 53
