miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AANI01013749.1/162474-162400 7244:Drosophila
          virilis
          Length = 75

 Score =  125 bits (63), Expect = 9e-29
 Identities = 73/75 (97%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  tcattcttcaaagtggttgtgaaatgtttgc-tttttctgcctactcatatcacagccag 64
          ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1  tcattcttcaaagtggttgtgaaatgtttgcctttttatgcctactcatatcacagccag 60

                         
Query: 65 ctttgaggagcgaca 79
          |||||||||||||||
Sbjct: 61 ctttgaggagcgaca 75




>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
          (fruit fly)
          Length = 69

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          |||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccagctttgaggagcg 66




>RF00047;mir-2;AAGE02012793.1/17551-17479 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 73

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 49 ctcatatcacagccagctttgaggagcga 77
          |||||||||||||||||||||| ||||||
Sbjct: 43 ctcatatcacagccagctttgaagagcga 71




>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 49 ctcatatcacagccagctttgaggagcg 76
          |||||||||||||||||||||| |||||
Sbjct: 35 ctcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
          corporis (human body louse)
          Length = 61

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          ||||||||||||||||||||| |||||
Sbjct: 32 tcatatcacagccagctttgatgagcg 58




>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 68

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          ||||||||||||||||||||| |||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
          silkworm)
          Length = 69

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 catatcacagccagctttgaggagcga 77
          |||||||||||||||||||| ||||||
Sbjct: 41 catatcacagccagctttgatgagcga 67




>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
          (honey bee)
          Length = 68

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          ||||||||||||||||||||| |||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AAWU01020422.1/10643-10573 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 71

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 catatcacagccagctttgaggagcga 77
          |||||||||||||||||||| ||||||
Sbjct: 43 catatcacagccagctttgaagagcga 69




>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 67

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 49 ctcatatcacagccagctttgaggagc 75
          |||||||||||||||||||||| ||||
Sbjct: 37 ctcatatcacagccagctttgatgagc 63




>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
          gambiae str. PEST
          Length = 76

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 49 ctcatatcacagccagctttgaggagc 75
          |||||||||||||||||||||| ||||
Sbjct: 46 ctcatatcacagccagctttgatgagc 72




>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          ||||||||||||||||||||| |||||
Sbjct: 36 tcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 tcatatcacagccagctttgaggagcg 76
          ||||||||||||||||||||| |||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
          (California sea hare)
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 50 tcatatcacagccagctttgaggagc 75
          ||||||||||||||||||||| ||||
Sbjct: 37 tcatatcacagccagctttgatgagc 62




>RF00047;mir-2;AAAB01008807.1/11606832-11606920 180454:Anopheles
          gambiae str. PEST
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 catatcacagccagctttgaggagcg 76
          |||||||||||||||||||| |||||
Sbjct: 61 catatcacagccagctttgaagagcg 86




>RF00047;mir-2;ABKP02009549.1/3713-3802 377271:Anopheles gambiae M
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 catatcacagccagctttgaggagcg 76
          |||||||||||||||||||| |||||
Sbjct: 62 catatcacagccagctttgaagagcg 87




>RF00047;mir-2;AAIZ01000971.1/3321-3388 7234:Drosophila persimilis
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 tcatatcacagccagctttgag 71
          ||||||||||||||||||||||
Sbjct: 40 tcatatcacagccagctttgag 61