miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60
Query: 66 aggtaaagatgtcgtccgt 84
|||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 74/81 (91%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagattcctgt--tttaaataactctaatactg 63
||||||||||||||||||||||||||||||||| ||| | || ||| |||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagatt-ttgtactatagatatctctaatactg 59
Query: 64 tcaggtaaagatgtcgtccgt 84
|||||||||||||||||||||
Sbjct: 60 tcaggtaaagatgtcgtccgt 80
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 67
||||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagatt--gattttaagtaattctaatactgtcag 60
Query: 68 gtaaagatgtc 78
|||| ||||||
Sbjct: 61 gtaatgatgtc 71
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 10 gttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcaggt 69
|||| |||||||||||||||||||||| |||||| | | | ||||||||||||||||
Sbjct: 5 gttcgcatcttaccgggcagcattagagtcctgtctatattt--tctaatactgtcaggt 62
Query: 70 aaagatgtcgtccg 83
||||||||||||||
Sbjct: 63 aaagatgtcgtccg 76
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagattcctgtt-ttaaataactctaatactgtc 65
||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagat--atgttatcggatatttctaatactgtc 59
Query: 66 aggtaaagatgtcgtccg 83
||||||||||||||||||
Sbjct: 60 aggtaaagatgtcgtccg 77
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 67
||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 59
Query: 68 gtaaagatgtcgtccg 83
||||||||||| ||||
Sbjct: 60 gtaaagatgtcctccg 75
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagatt 33
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||||||||||
Sbjct: 44 tctaatactgtcaggtaaagatgtc 68
