miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 12 cggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaatacaactgca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaatacaactgca 60
Query: 72 gtgcaagctccg 83
||||||||||||
Sbjct: 61 gtgcaagctccg 72
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 cggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaatacaactgca 71
||||||||||||||||||||||||||||| || | || | |||||||||||||||||
Sbjct: 1 cggaggtgcattgtagtcgcattgtctgtctcaaat-ttgcccgcggcaatacaactgca 59
Query: 72 gtgcaagctccg 83
||||||||||||
Sbjct: 60 gtgcaagctccg 71
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagct 80
||||||||||||||||||||||||
Sbjct: 64 ggcaatacaactgcagtgcaagct 87
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
