miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
          Length = 77

 Score =  153 bits (77), Expect = 5e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 12 gtttttctcctggtatccactgtaggcctctatgaattttgaccataaggcacgcggtga 71
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtttttctcctggtatccactgtaggcctctatgaattttgaccataaggcacgcggtga 60

                           
Query: 72 atgccaagagcgaacga 88
          |||||||||||||||||
Sbjct: 61 atgccaagagcgaacga 77




>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
          grimshawi
          Length = 77

 Score =  137 bits (69), Expect = 3e-32
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                      
Query: 12 gtttttctcctggtatccactgtaggcctctatgaattttgaccataaggcacgcggtga 71
          ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 1  gtttttctcctggtatccactgtaggcctctatgttttttgaccataaggcacgcggtga 60

                           
Query: 72 atgccaagagcgaacga 88
          |||||||||||||||||
Sbjct: 61 atgccaagagcgaacga 77




>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 83

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 55 cataaggcacgcggtgaatgccaagagcgaacg 87
          |||||||||||||||||||||||||||||||||
Sbjct: 50 cataaggcacgcggtgaatgccaagagcgaacg 82




>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 83

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 55 cataaggcacgcggtgaatgccaagagcgaacga 88
          ||||||||||||||||||||||||||||| ||||
Sbjct: 50 cataaggcacgcggtgaatgccaagagcggacga 83




>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
          (domestic silkworm)
          Length = 83

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 55 cataaggcacgcggtgaatgccaagagcg 83
          |||||||||||||||||||||||||||||
Sbjct: 50 cataaggcacgcggtgaatgccaagagcg 78




>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
          (honey bee)
          Length = 86

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 55 cataaggcacgcggtgaatgccaagagcg 83
          |||||||||||||||||||||||||||||
Sbjct: 53 cataaggcacgcggtgaatgccaagagcg 81




>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
          humanus corporis (human body louse)
          Length = 78

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 55 cataaggcacgcggtgaatgccaagagc 82
          ||||||||||||||||||||||||||||
Sbjct: 45 cataaggcacgcggtgaatgccaagagc 72




>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
          castaneum (red flour beetle)
          Length = 79

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 55 cataaggcacgcggtgaatgccaagagc 82
          ||||||||||||||||||||||||||||
Sbjct: 46 cataaggcacgcggtgaatgccaagagc 73




>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 80

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 taaggcacgcggtgaatgccaagagcg 83
          |||||||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaagagcg 75




>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
          carolinensis (green anole)
          Length = 80

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 taaggcacgcggtgaatgccaagagcg 83
          |||||||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaagagcg 75




>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 83

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 55 cataaggcacgcggtgaatgccaagagcgaa 85
          |||||||||||||||||||||||||| ||||
Sbjct: 50 cataaggcacgcggtgaatgccaagatcgaa 80




>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
          scapularis (black-legged tick)
          Length = 81

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 55 cataaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||||
Sbjct: 48 cataaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
          carolinensis (green anole)
          Length = 81

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 taaggcacgcggtgaatgccaagagc 82
          ||||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagagc 75




>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
          pacificus
          Length = 84

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagag 77




>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
          (zebrafish)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
          (zebrafish)
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 51 taaggcacgcggtgaatgccaagag 75




>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 51 taaggcacgcggtgaatgccaagag 75




>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaagag 73




>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
          (Japanese medaka)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaagag 73




>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 taaggcacgcggtgaatgccaagag 81
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 taaggcacgcggtgaatgccaaga 80
          ||||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaaga 72




>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
          Length = 80

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 57 taaggcacgcggtgaatgccaag 79
          |||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaag 71




>RF00239;mir-124;AAGJ02120869.1/14315-14397
          7668:Strongylocentrotus purpuratus
          Length = 83

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 57 taaggcacgcggtgaatgccaag 79
          |||||||||||||||||||||||
Sbjct: 51 taaggcacgcggtgaatgccaag 73




>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
          Length = 79

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 ataaggcacgcggtgaatgccaa 78
          |||||||||||||||||||||||
Sbjct: 47 ataaggcacgcggtgaatgccaa 69




>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
          intestinalis
          Length = 79

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 ataaggcacgcggtgaatgccaa 78
          |||||||||||||||||||||||
Sbjct: 47 ataaggcacgcggtgaatgccaa 69




>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
          intestinalis
          Length = 79

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 ataaggcacgcggtgaatgccaa 78
          |||||||||||||||||||||||
Sbjct: 47 ataaggcacgcggtgaatgccaa 69




>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
          (Sumatran orangutan)
          Length = 62

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 ataaggcacgcggtgaatgccaa 78
          |||||||||||||||||||||||
Sbjct: 40 ataaggcacgcggtgaatgccaa 62




>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 taaggcacgcggtgaatgccaa 78
          ||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70




>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 taaggcacgcggtgaatgccaa 78
          ||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69




>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
          (zebrafish)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 taaggcacgcggtgaatgccaa 78
          ||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70