miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 2 aacgctgtgtgtagttggttgacatcgggtcagatctgtttttcgagaatttggtcccct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacgctgtgtgtagttggttgacatcgggtcagatctgtttttcgagaatttggtcccct 60
Query: 62 tcaaccagctgtagcagtggttgat 86
|||||||||||||||||||||||||
Sbjct: 61 tcaaccagctgtagcagtggttgat 85
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 123 bits (62), Expect = 4e-28
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 aacgctgtgtgtagttggttgacatcgggtcagatctgttt-ttcgagaatttggtcccc 60
|||||||| ||||| |||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 1 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 60
Query: 61 ttcaaccagctgtagcagtggttgat 86
||||||||||||||||||||||||||
Sbjct: 61 ttcaaccagctgtagcagtggttgat 86
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 119 bits (60), Expect = 6e-27
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 aacgctgtgtgtagttggttgacatcgggtcagatctgtttttcgagaatttggtcccct 61
|||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1 aacgctgtgtgtagctggttgacatcgggtcagatctgttttttaagcatttggtcccct 60
Query: 62 tcaaccagctgtag-cagtggttg 84
|||||||||||||| |||||||||
Sbjct: 61 tcaaccagctgtagccagtggttg 84
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 117 bits (59), Expect = 2e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 caacgctgtgtgtagttggttgacatcgggtcagatctgt-ttttcgagaatttggtccc 59
||||||||| ||||| |||||||||||||||||||||| | ||||| || ||||||||||
Sbjct: 5 caacgctgtatgtagctggttgacatcgggtcagatctatcttttcaagcatttggtccc 64
Query: 60 cttcaaccagctgtagcagtggttgat 86
|||||||||||||||||||||||||||
Sbjct: 65 cttcaaccagctgtagcagtggttgat 91
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 101 bits (51), Expect = 1e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 5 gctgtgtgtagttggttgacatcgggtcagatctgtttt-tcgagaatttggtccccttc 63
||||| ||||| |||||||||||||||||||||| |||| || || ||||||||||||||
Sbjct: 5 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 64
Query: 64 aaccagctgtagcagtggttgat 86
||||||||||| |||||||||||
Sbjct: 65 aaccagctgtatcagtggttgat 87
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 11 tgtagttggttgacatcgggtcagatctgttt--ttcgagaatttggtccccttcaacca 68
||||| |||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct: 11 tgtagctggttgacatcgggtcagatctatttatttgaagcatttggtccccttcaacca 70
Query: 69 gctgtagcagtggttgat 86
||||||||||||||||||
Sbjct: 71 gctgtagcagtggttgat 88
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagcagtg 80
|||||||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagcagtg 100
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagcagtg 80
|||||||||||||||||||||||||||||||
Sbjct: 68 atttggtccccttcaaccagctgtagcagtg 98
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagc 76
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagc 76
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagc 76
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagc 76
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagc 76
|||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tttggtccccttcaaccagctgtagcagtg 80
||||||||||||||||||||| ||||||||
Sbjct: 52 tttggtccccttcaaccagctatagcagtg 81
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtag 75
||||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgtag 78
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtag 75
||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtag 75
||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgtagca 77
||||||||||||||||||||| ||||||
Sbjct: 52 atttggtccccttcaaccagccgtagca 79
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgt 73
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgt 73
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgt 73
||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctgt 73
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 atttggtccccttcaaccagctg 72
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tttggtccccttcaaccagctg 72
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
