miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00822;mir-274;AAPU01011627.1/22605-22713 7230:Drosophila
mojavensis
Length = 109
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tttcggtttgtgaccgacactaacgggtagttgaggcatctcgtattcgctgttttatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tttcggtttgtgaccgacactaacgggtagttgaggcatctcgtattcgctgttttatac 73
Query: 61 tcgtttttgcgatcacaaattctgaaa 87
|||||||||||||||||||||||||||
Sbjct: 74 tcgtttttgcgatcacaaattctgaaa 100
>RF00822;mir-274;AANI01017486.1/215294-215400 7244:Drosophila
virilis
Length = 107
Score = 119 bits (60), Expect = 6e-27
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 tttcggtttgtgaccgacactaacgggtagttgaggcatctcgtattcgctgttttatac 60
||||||||||||||||||||||||||||||||| |||| |||| || |||||||| |||
Sbjct: 14 tttcggtttgtgaccgacactaacgggtagttggggcacctcgaatacgctgttt--tac 71
Query: 61 tcgtttttgcgatcacaaattctgaaa 87
|||||||||||||||||||||||||||
Sbjct: 72 tcgtttttgcgatcacaaattctgaaa 98
>RF00822;mir-274;AAPT01020611.1/127253-127143 7222:Drosophila
grimshawi
Length = 111
Score = 73.8 bits (37), Expect = 3e-13
Identities = 81/91 (89%), Gaps = 6/91 (6%)
Strand = Plus / Plus
Query: 1 tttcggtttgtgaccgacactaacgggtagttga--ggcat-ctcgtattc-gctgtttt 56
|||||||||||||||||||||||||||||||| | ||||| |||| |||| |||| |
Sbjct: 14 tttcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggct- 72
Query: 57 atactcgtttttgcgatcacaaattctgaaa 87
||||||||||||||||||||||||||||||
Sbjct: 73 -tactcgtttttgcgatcacaaattctgaaa 102
>RF00822;mir-274;AAQB01007682.1/34817-34703 7260:Drosophila
willistoni
Length = 115
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaaattctgaaa 87
||||||||||||||||||||||||||||||
Sbjct: 77 tactcgtttttgcgatcacaaattctgaaa 106
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tttgtgaccgacactaacgggtagt 31
|||||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggtagt 44
>RF00822;mir-274;AAPP01019289.1/330187-330287 7217:Drosophila
ananassae
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaaattctgaaa 87
||||||||||||||||||||||| ||||||
Sbjct: 63 tactcgtttttgcgatcacaaatcctgaaa 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tttcggtttgtgaccgacactaacgggta 29
||||| |||||||||||||||||||||||
Sbjct: 14 tttcgttttgtgaccgacactaacgggta 42
>RF00822;mir-274;AAKO01000079.1/37948-38047 7238:Drosophila
sechellia
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tttcggtttgtgaccgacactaacgggta 29
||||| |||||||||||||||||||||||
Sbjct: 14 tttcgttttgtgaccgacactaacgggta 42
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaaat 80
|||||||||||||||||||||||
Sbjct: 62 tactcgtttttgcgatcacaaat 84
>RF00822;mir-274;AADE01002814.1/8876-8780 46245:Drosophila
pseudoobscura pseudoobscura
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttgtgaccgacactaacgggta 29
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
