miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
virilis
Length = 93
Score = 168 bits (85), Expect = 7e-42
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 cctggtttttgccatcagcgaggtatagagttcctacgttcaatttaaatactcgtagga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggtttttgccatcagcgaggtatagagttcctacgttcaatttatatactcgtagga 60
Query: 61 acttcataccgtgctcttggaagaccaaa 89
|||||||||||||||||||||||||||||
Sbjct: 61 acttcataccgtgctcttggaagaccaaa 89
>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
mojavensis
Length = 96
Score = 85.7 bits (43), Expect = 9e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 12 ccatcagcgaggtatagagttcctacgttc-aatttaaatactcgtaggaacttcatacc 70
|||||||||||||||||||||||||||| | |||| |||| |||||||||||| |||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtgcaaattgcaatagtcgtaggaacttaatacc 73
Query: 71 gtgctcttgga 81
|||||||||||
Sbjct: 74 gtgctcttgga 84
>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
(pea aphid)
Length = 97
Score = 81.8 bits (41), Expect = 1e-15
Identities = 64/70 (91%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 17 agcgaggtatagagttcctacgttcaattta--aat---actcgtaggaacttcataccg 71
||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgttcaaattattaatgttactcgtaggaacttcataccg 75
Query: 72 tgctcttgga 81
||||||||||
Sbjct: 76 tgctcttgga 85
>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
melanogaster (fruit fly)
Length = 94
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 tttttgccatcagcgaggtatagagttcctacgttcaatttaaatactcgtaggaacttc 65
||||| |||||||||||||||||||||||||||||| | || | ||||||||||||
Sbjct: 8 tttttaccatcagcgaggtatagagttcctacgttc-ctatattcagtcgtaggaactta 66
Query: 66 ataccgtgctcttgga 81
||||||||||||||||
Sbjct: 67 ataccgtgctcttgga 82
>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
pseudoobscura pseudoobscura
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 12 ccatcagcgaggtatagagttcctacgttcaatttaaatactcgtaggaacttcataccg 71
|||||||||||||||||||||||||||| | | | | | |||||||||||| ||||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtgccgtatccaaagtcgtaggaacttaataccg 73
Query: 72 tgctcttgga 81
||||||||||
Sbjct: 74 tgctcttgga 83
>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
(yellow fever mosquito)
Length = 94
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 9 ttgccatcagcgaggtatagagttcctacgtt 40
||||||||||||||||||||||||||||||||
Sbjct: 9 ttgccatcagcgaggtatagagttcctacgtt 40
>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
corporis (human body louse)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 16 cagcgaggtatagagttcctacgttcaatttaaatactcgtaggaacttcataccgtgct 75
|||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgtgc--tttggttact-gtaggaacttcataccgtgct 72
Query: 76 cttgga 81
||||||
Sbjct: 73 cttgga 78
>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
gambiae S
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 tgccatcagcgaggtatagagttcctacg 38
|||||||||||||||||||||||||||||
Sbjct: 10 tgccatcagcgaggtatagagttcctacg 38
>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
(jewel wasp)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 16 cagcgaggtatagagttcctacgttcaatttaaatactcgtaggaacttcataccgtgct 75
|||||||||||||||||||||||| | || | | | |||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 73
Query: 76 cttgga 81
||||||
Sbjct: 74 cttgga 79
>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
gambiae M
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 50 tactcgtaggaacttcataccgtgctcttgga 81
||||| ||||||||||||||||||||||||||
Sbjct: 57 tactcataggaacttcataccgtgctcttgga 88
>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
S
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 50 tactcgtaggaacttcataccgtgctcttgga 81
||||| ||||||||||||||||||||||||||
Sbjct: 57 tactcataggaacttcataccgtgctcttgga 88
>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
(honey bee)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gtaggaacttcataccgtgctcttgga 81
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 cagcgaggtatagagttcctacgt 39
||||||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgt 40
>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 15 tcagcgaggtatagagttccta--cgttcaatttaaatactcg-taggaacttcataccg 71
|||||||||||||||||||||| ||||| | ||||| || ||||||||||||||||
Sbjct: 14 tcagcgaggtatagagttcctatgcgttcggataaaatattccataggaacttcataccg 73
Query: 72 tgctcttgga 81
||||||||||
Sbjct: 74 tgctcttgga 83
>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gtaggaacttcataccgtgctcttgga 81
|||||||||||||||||||||||||||
Sbjct: 50 gtaggaacttcataccgtgctcttgga 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 agcgaggtatagagttcctacgt 39
|||||||||||||||||||||||
Sbjct: 15 agcgaggtatagagttcctacgt 37
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
silkworm)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 gtaggaacttcataccgtgctcttgg 80
||||||||||||||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgg 76
>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 taggaacttcataccgtgctcttgga 81
||||||||||||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgga 85
