miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00729;mir-278;AANI01014820.1/6361-6262 7244:Drosophila virilis
Length = 100
Score = 127 bits (64), Expect = 3e-29
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ttatggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtc 60
||||||||||||||||||||||||||||||||||||||||| || | ||| ||| ||||
Sbjct: 2 ttatggtacggtgcgaccggatgatggttcacaacgaccgtgca-tacttttaactggtc 60
Query: 61 ggtgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgggactttcgtccgtttgtaacgccattt 92
>RF00729;mir-278;AAPP01018781.1/36806-36709 7217:Drosophila
ananassae
Length = 98
Score = 119 bits (60), Expect = 6e-27
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtccttcgaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>RF00729;mir-278;AAWU01001740.1/43930-44034 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 56 gggtcggtgggactttcgtccgtttgtaac 85
||||||||||||||||||||||||||||||
Sbjct: 61 gggtcggtgggactttcgtccgtttgtaac 90
>RF00729;mir-278;AAGE02001172.1/33036-33136 7159:Aedes aegypti
(yellow fever mosquito)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttgtaac 85
|||||||||||||||||||||||||||||
Sbjct: 58 ggtcggtgggactttcgtccgtttgtaac 86
>RF00729;mir-278;ABKP02019144.1/2398-2299 377271:Anopheles gambiae
M
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttgtaacgcca 89
|||||||||||||||||||||||||||| ||||
Sbjct: 57 ggtcggtgggactttcgtccgtttgtaaggcca 89
>RF00729;mir-278;AADG05005760.1/28066-27969 7460:Apis mellifera
(honey bee)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttg 81
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>RF00729;mir-278;AAZO01005350.1/16349-16259 121224:Pediculus
humanus corporis (human body louse)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcggtgggactttcgtccgttt 80
||||||||||||||||||||||
Sbjct: 52 tcggtgggactttcgtccgttt 73
