miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila
virilis
Length = 96
Score = 139 bits (70), Expect = 7e-33
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 gtactactgtttttagtgagtgagggtccagtgtttcacatt-gtttgcttaagtatttg 59
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 3 gtactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttg 62
Query: 60 tgactagatccacactcattaaaaacggtagttc 93
|||||||||||||||||||||| |||||||||||
Sbjct: 63 tgactagatccacactcattaacaacggtagttc 96
>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
willistoni
Length = 94
Score = 119 bits (60), Expect = 7e-27
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattgtttgcttaagtatttgtg 61
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 4 tactactgtttttagtgagtgagggtccagtgtttcacattaaat-atttagtatttgtg 62
Query: 62 actagatccacactcattaaaaacggtagttc 93
|||||||||||||||||||| |||||||||||
Sbjct: 63 actagatccacactcattaataacggtagttc 94
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
Length = 95
Score = 113 bits (57), Expect = 4e-25
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
|||| |||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 4 tactgctgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 62
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 63 gactagatccacactcattaataacggtagttc 95
>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgtgactagatccacactcattaa 81
|||||||||||||||||||||||||
Sbjct: 50 ttgtgactagatccacactcattaa 74
>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
gambiae M
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgtgactagatccacactcattaa 81
|||||||||||||||||||||||||
Sbjct: 55 ttgtgactagatccacactcattaa 79
>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
vitripennis (jewel wasp)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 51 tgtgactagatccacactcattaa 74
>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 gtgactagatccacactcattaa 81
|||||||||||||||||||||||
Sbjct: 55 gtgactagatccacactcattaa 77
