miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 206 bits (104), Expect = 5e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 12 gtgtaactatggtgttggctcggctcactcagaagttgaagccgaatccaaatggtagct 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtaactatggtgttggctcggctcactcagaagttgaagccgaatccaaatggtagct 60
Query: 72 gccggcgtttctgattgagccgtgccaatatctcagtactcttt 115
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggcgtttctgattgagccgtgccaatatctcagtactcttt 104
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 190 bits (96), Expect = 3e-48
Identities = 102/104 (98%)
Strand = Plus / Plus
Query: 12 gtgtaactatggtgttggctcggctcactcagaagttgaagccgaatccaaatggtagct 71
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgtgactatggtgttggctcggctcactcagaagttgaagccgaatctaaatggtagct 60
Query: 72 gccggcgtttctgattgagccgtgccaatatctcagtactcttt 115
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggcgtttctgattgagccgtgccaatatctcagtactcttt 104
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 85.7 bits (43), Expect = 1e-16
Identities = 95/112 (84%), Gaps = 9/112 (8%)
Strand = Plus / Plus
Query: 12 gtgtaactatggtgttggctcggctcactcagaagttgaa--------gccgaatccaaa 63
|||||||| |||||||||||||||||||||||||| |||| | ||||| |||
Sbjct: 1 gtgtaactgtggtgttggctcggctcactcagaagctgaaatagtagtgatgaatctaaa 60
Query: 64 tggtagctgccggcgtttctgattgagccgtgccaatatctcagtactcttt 115
|||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 tggtagctat-ggcgtttctgattgagccgtgccaatatcttagtactcttt 111
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 78 gtttctgattgagccgtgccaatatctcagtactctt 114
|||||||||||||||||||||||||||||||||||||
Sbjct: 100 gtttctgattgagccgtgccaatatctcagtactctt 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctatggtgttggctcggctcactcaga 44
||||| |||||||||||||||||||||
Sbjct: 7 ctatgatgttggctcggctcactcaga 33
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 78 gtttctgattgagccgtgccaatatctcagtactcttt 115
||||||||||||||||||||||||||| ||| ||||||
Sbjct: 99 gtttctgattgagccgtgccaatatcttagtgctcttt 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctatggtgttggctcggctcactcaga 44
||||| |||||||||||||||||||||
Sbjct: 7 ctatgatgttggctcggctcactcaga 33
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 78 gtttctgattgagccgtgccaatatctcagtactcttt 115
||||||||||||||||||||||||||| ||| ||||||
Sbjct: 84 gtttctgattgagccgtgccaatatcttagtgctcttt 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctatggtgttggctcggctcactcaga 44
||||| |||||||||||||||||||||
Sbjct: 7 ctatgatgttggctcggctcactcaga 33
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 78 gtttctgattgagccgtgccaatatctcagtactcttt 115
||||||||||||||||||||||||||| ||| ||||||
Sbjct: 84 gtttctgattgagccgtgccaatatcttagtgctcttt 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctatggtgttggctcggctcactcaga 44
||||| |||||||||||||||||||||
Sbjct: 7 ctatgatgttggctcggctcactcaga 33
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatctcagtactct 113
||||||||||||| |||||||||||||||||||
Sbjct: 80 tctgattgagccgcgccaatatctcagtactct 112
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 ttctgattgagccgtgccaatatctcag 107
||||||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatctcag 129
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatctcagtactcttt 115
|||||||||||||||||||||||| ||| ||||||
Sbjct: 99 tctgattgagccgtgccaatatcttagtgctcttt 133
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagt 108
||||||||||||||||||||||||||
Sbjct: 111 tgattgagccgtgccaatatctcagt 136
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagt 108
||||||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatctcagt 118
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagt 108
||||||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagt 107
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagt 108
||||||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatctcagt 127
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatctcagtactct 113
||||||||||||| |||||||||||||| ||||
Sbjct: 75 tctgattgagccgcgccaatatctcagtgctct 107
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatctcagtactct 113
||||||||||||||| |||||||||||| ||||
Sbjct: 52 tctgattgagccgtgtcaatatctcagtcctct 84
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagtactcttt 115
|||||||||||||||||||||| ||| ||||||
Sbjct: 106 tgattgagccgtgccaatatcttagtgctcttt 138
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctcagtact 111
|||||||||||||||||||||||| ||||
Sbjct: 85 tgattgagccgtgccaatatctcactact 113
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctca 106
||||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctca 105
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctca 106
||||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatctca 135
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatctc 105
|||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatctc 112
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatatc 87
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctgattgagccgtgccaatatc 103
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgtgccaatatct 104
||||||||||||||||||||||
Sbjct: 86 tgattgagccgtgccaatatct 107
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gtttctgattgagccgtgccaatatc 103
|||| |||||||||||||||||||||
Sbjct: 64 gtttttgattgagccgtgccaatatc 89
