miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgtatgccacacatgtagccaacccgtggcgtgattggatgctgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgccacacatgtagccaacccgtggcgtgattggatgctgt 60
Query: 68 gggtggcgtgcaaggagccaagcatgc 94
|||||||||||||||||||||||||||
Sbjct: 61 gggtggcgtgcaaggagccaagcatgc 87
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 115 bits (58), Expect = 1e-25
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtg 68
||||||||||||||||||||||| ||||||||| || || ||| ||| ||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtg 62
Query: 69 ggtggcgtgcaaggagccaagcatgc 94
||||||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcaaggagccaagcatgc 88
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 79/90 (87%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgtatgccacacatgtag-ccaacccgtggcgtgattggatgc-- 64
||||||||||||||||||||||||||||||||| ||||||| || ||| ||| |||
Sbjct: 1 gtgtgcctggctccctgtatgccacacatgtagaccaacccatg--gtgtctggttgcct 58
Query: 65 tgtgggtggcgtgcaaggagccaagcatgc 94
||||||||||||||||||||||||||||
Sbjct: 59 actgggtggcgtgcaaggagccaagcatgc 88
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacacatgta-gccaacccgtggcgtgattggatgctgt 67
||||||||||||||||||||||||||||| | |||| | ||| |||||||| ||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatggacaccaatctttgg-gtgattggtgactgt 60
Query: 68 gggtggcgtgcaaggagccaagcatgc 94
|||||| ||||||||||||||||||||
Sbjct: 61 gggtggtgtgcaaggagccaagcatgc 87
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgtatgccacacatgtagcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgccacacatgtagcc 35
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccacacatgtagc 41
||||||||||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccacacatgtagc 34
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgctgtgggtggcgtgcaaggagccaagcatgc 94
||||||||||||||||||||| |||||||||||
Sbjct: 60 tgctgtgggtggcgtgcaaggggccaagcatgc 92
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccaca 26
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 3 tgcctggctccctgtatgccaca 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 55 gattggatgctgtgggtggcgtgcaaggagccaagcat 92
|||||| ||||| |||||||||| |||||||||||||
Sbjct: 51 gattggctgctgccggtggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
