miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 99.6 bits (50), Expect = 6e-21
Identities = 72/79 (91%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagatcc----tttagatacctctaatactgtc 62
|||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60
Query: 63 aggtaaagatgtcgtccgt 81
|||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 95.6 bits (48), Expect = 9e-20
Identities = 72/80 (90%), Gaps = 5/80 (6%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagatc-----ctttagatacctctaatactgt 61
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60
Query: 62 caggtaaagatgtcgtccgt 81
||||||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtccgt 80
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 83.8 bits (42), Expect = 3e-16
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagatccttta---gatacctctaatactgtcag 64
||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 61
Query: 65 gtaaagatgtcgtccg 80
||||||||||||||||
Sbjct: 62 gtaaagatgtcgtccg 77
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagatc-ctttagatacctctaatactgtcaggta 67
||||| |||||||||||||||||||||||| | || |||| |||||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 62
Query: 68 aagatgtcgtccg 80
|||||||| ||||
Sbjct: 63 aagatgtcctccg 75
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 69.9 bits (35), Expect = 5e-12
Identities = 67/74 (90%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagatcctttagat-acc-tctaatactgtcag 64
|||||||||||||||||||||||||||||||| | || | ||| ||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagat--tgaagttgaccttctaatactgtcag 58
Query: 65 gtaaagatgtcgtc 78
||||||||||||||
Sbjct: 59 gtaaagatgtcgtc 72
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 11 gttcacatcttaccgggcagcattaga-tcctttagatacct-ctaatactgtcaggtaa 68
|||| |||||||||||||||||||||| |||| | ||| | |||||||||||||||||
Sbjct: 5 gttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaa 64
Query: 69 agatgtcgtccg 80
||||||||||||
Sbjct: 65 agatgtcgtccg 76
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagat 38
||||| ||||||||||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagat 32
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||
Sbjct: 44 tctaatactgtcaggtaaagatgtc 68
