miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ctcttgtcaagaacttattctgtgacctgcgtgacatttagccacatcacagtctgagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctcttgtcaagaacttattctgtgacctgcgtgacatttagccacatcacagtctgagtt 61
Query: 61 cttgctgagcg 71
|||||||||||
Sbjct: 62 cttgctgagcg 72
>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
willistoni
Length = 85
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||||||||
Sbjct: 58 catcacagtctgagttcttgctgagcg 84
>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
ananassae
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgctgag 69
|||||||||||||||||||||||||||
Sbjct: 50 cacatcacagtctgagttcttgctgag 76
>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
grimshawi
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||||||||
Sbjct: 54 catcacagtctgagttcttgctgagcg 80
>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 50 cacatcacagtctgagttcttgct 73
>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
(yellow fever mosquito)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 49 cacatcacagtctgagttcttgct 72
>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
Length = 90
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 61 cacatcacagtctgagttcttgct 84
>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
virilis
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||| ||||
Sbjct: 54 catcacagtctgagttcttgcttagcg 80
>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
mojavensis
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 caagaacttattctgtgacctgcgtga 34
||||||||| |||||||||||||||||
Sbjct: 9 caagaactttttctgtgacctgcgtga 35
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||| ||||
Sbjct: 54 catcacagtctgagttcttgcttagcg 80
