miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
persimilis
Length = 68
Score = 135 bits (68), Expect = 8e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 60
Query: 62 gagtttgg 69
||||||||
Sbjct: 61 gagtttgg 68
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
Length = 67
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 61
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgtttgtgaacttatgtattcgc-aatcatatcacagccattttgac 59
Query: 62 gagtttgg 69
||||||||
Sbjct: 60 gagtttgg 67
>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
Length = 67
Score = 79.8 bits (40), Expect = 4e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 61
||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgcctgtgaccttatgtatt-ttatatcatatcacagccattttgac 59
Query: 62 gagtttgg 69
||||||||
Sbjct: 60 gagtttgg 67
>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
willistoni
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgtttgtgaccttatgtact--cttgaatcatatcacagccattttg 59
||||||||||||||||||||||| |||||| | || | |||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgtttgtgactttatgttgtgtctctattcatatcacagccattttg 60
Query: 60 acgagtttgg 69
||||||||||
Sbjct: 61 acgagtttgg 70
>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
ananassae
Length = 68
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttgg 69
|||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
mojavensis
Length = 69
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||||||
Sbjct: 40 atcatatcacagccattttgacgagtttg 68
>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 49 tcatatcacagccattttgacgagtttg 76
>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
gambiae str. PEST
Length = 71
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
Length = 73
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtttg 72
>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
(yellow fever mosquito)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtt 66
||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtt 68
>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
willistoni
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtt 66
||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtt 70
>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 tatcacagccattttgacgagtttgg 69
||||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttgg 68
>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
persimilis
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 aatcatatcacagccattttgacgagttt 67
|||||||||||||||||||||| ||||||
Sbjct: 38 aatcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgatgagttt 67
>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
mojavensis
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AADG05000005.1/25311-25372 7460:Apis mellifera
(honey bee)
Length = 62
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttgg 69
|||||||||||||||||||| ||| ||||
Sbjct: 34 tcatatcacagccattttgatgagcttgg 62