miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
Length = 68
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 3 ttacgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgac 60
Query: 63 gagtttg 69
|||||||
Sbjct: 61 gagtttg 67
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
Length = 68
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 5 acgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacga 64
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3 acgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacga 62
Query: 65 gtttg 69
|||||
Sbjct: 63 gtttg 67
>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
ananassae
Length = 68
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 6 cgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacgag 65
|||||| |||||||||||| |||| || |||||| ||||||||||||||||||||||||
Sbjct: 4 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 63
Query: 66 tttg 69
||||
Sbjct: 64 tttg 67
>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
mojavensis
Length = 69
Score = 65.9 bits (33), Expect = 6e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 6 cgcgtcaaaatgactgtgagctatgtgtttttgatc-tcatatcacagccattttgacga 64
||||||||| |||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
Query: 65 gtttg 69
|||||
Sbjct: 64 gtttg 68
>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
Length = 73
Score = 58.0 bits (29), Expect = 1e-08
Identities = 63/70 (90%), Gaps = 7/70 (10%)
Strand = Plus / Plus
Query: 6 cgcgtcaaaatgactgtgagctatgt-gtt---tttg--atctcatatcacagccatttt 59
|||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgttgttgcatttgccat-tcatatcacagccatttt 62
Query: 60 gacgagtttg 69
||||||||||
Sbjct: 63 gacgagtttg 72
>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 49 tcatatcacagccattttgacgagtttg 76
>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
gambiae str. PEST
Length = 71
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
willistoni
Length = 70
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttg 69
>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
persimilis
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
Length = 67
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66
>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
Length = 67
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtttg 69
||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66
>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
(yellow fever mosquito)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtt 67
||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtt 68
>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
willistoni
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 cgcgtcaaaatgactgtgagctatgt 31
||||||||||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgt 29
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagtt 67
||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtt 70
>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 tatcacagccattttgacgagtttg 69
|||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttg 67
>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ctcatatcacagccattttgacgagttt 68
||||||||||||||||||||| ||||||
Sbjct: 40 ctcatatcacagccattttgatgagttt 67
>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
persimilis
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagttt 68
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
mojavensis
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tcatatcacagccattttgacgagttt 68
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66