miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAIZ01001980.1/15086-15173 7234:Drosophila
persimilis
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
Query: 61 gctatgctgcatctagtcagttattcaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttattcaa 88
>RF00661;mir-31;AAGH01011800.1/12196-12109 7240:Drosophila
simulans
Length = 88
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaa 88
||||||||||||||||||| |||||
Sbjct: 64 atgctgcatctagtcagttgttcaa 88
>RF00661;mir-31;AAPQ01007042.1/187291-187204 7220:Drosophila
erecta
Length = 88
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgcttttaaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaa 88
||||||||||||||||||| |||||
Sbjct: 64 atgctgcatctagtcagttgttcaa 88
>RF00661;mir-31;AANI01014909.1/166793-166706 7244:Drosophila
virilis
Length = 88
Score = 87.7 bits (44), Expect = 2e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
||||||| | |||||||||||||||||||||||||| ||| |||||| ||| | | |
Sbjct: 1 tctgttgttcaattggcaagatgtcggcatagctgacgtttgaaagcgcatttttatagc 60
Query: 61 gctatgctgcatctagtcagttattcaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttattcaa 88
>RF00661;mir-31;AAPU01010140.1/40129-40215 7230:Drosophila
mojavensis
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/79 (88%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgaagttgaaaagcgatctttg-agaacgctatgctg 69
|||||||||||||||||||||||||| ||| |||||| | ||| | | ||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg--cattgcatagcgctatgctg 68
Query: 70 catctagtcagttattcaa 88
|||||||||||||||||||
Sbjct: 69 catctagtcagttattcaa 87
>RF00661;mir-31;AAQB01006276.1/72264-72183 7260:Drosophila
willistoni
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctga 36
||||||||||||||||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctga 36
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 cgctatgctgcatctagtcagtt 82
|||||||||||||||||||||||
Sbjct: 54 cgctatgctgcatctagtcagtt 76
>RF00661;mir-31;AAJJ01000269.1/62248-62171 7070:Tribolium
castaneum (red flour beetle)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctgaag 38
||||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctgaag 38
>RF00661;mir-31;AAZO01004538.1/561-481 121224:Pediculus humanus
corporis (human body louse)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctgaa 37
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctgaa 37
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tggcaagatgtcggcatagctgaagt 39
||||||||||| ||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctgaagt 39
>RF00661;mir-31;AAZX01004302.1/23296-23375 7425:Nasonia
vitripennis (jewel wasp)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>RF00661;mir-31;AADG05006757.1/17977-18057 7460:Apis mellifera
(honey bee)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
