miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AAFS01000411.1/37510-37407 46245:Drosophila
pseudoobscura pseudoobscura
Length = 104
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttga 60
Query: 62 ccattcacagccactatcttcactgccgccgcgacaagc 100
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccattcacagccactatcttcactgccgccgcgacaagc 99
>RF00711;mir-449;AASS01031694.1/773-875 7240:Drosophila simulans
Length = 103
Score = 157 bits (79), Expect = 3e-38
Identities = 95/99 (95%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttga 61
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtagcc-aattattgccgttga 59
Query: 62 ccattcacagccactatcttcactgccgccgcgacaagc 100
| |||||||||||||||||||||||||||||||||||||
Sbjct: 60 caattcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AAPQ01006467.1/383882-383780 7220:Drosophila erecta
Length = 103
Score = 133 bits (67), Expect = 5e-31
Identities = 92/99 (92%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttga 61
|||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtagcc-aatcattgcttgtga 59
Query: 62 ccattcacagccactatcttcactgccgccgcgacaagc 100
| | |||||||||||||||||||||||||||||||||||
Sbjct: 60 caactcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AANI01014607.1/367710-367617 7244:Drosophila
virilis
Length = 94
Score = 103 bits (52), Expect = 4e-22
Identities = 86/99 (86%), Gaps = 10/99 (10%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttga 61
|||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ttga 50
Query: 62 ccattcacagccactatcttcactgccgccgcgacaagc 100
| | |||||||||||||||||||||||||||||||||||
Sbjct: 51 caaatcacagccactatcttcactgccgccgcgacaagc 89
>RF00711;mir-449;AAQB01008630.1/408110-408004 7260:Drosophila
willistoni
Length = 107
Score = 91.7 bits (46), Expect = 2e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagccaa 47
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtagccaa 46
>RF00711;mir-449;AAPP01019533.1/13885-13988 7217:Drosophila
ananassae
Length = 104
Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 2 attggctatgcgctttggcagtgtggttagctggttgtgtagc 44
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attggctatgcgctttggcagtgtggttagctggttgtgtagc 43
>RF00711;mir-449;AAZX01003771.1/10900-10991 7425:Nasonia
vitripennis (jewel wasp)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 ttggcagtgtggttagctggttgtgtagc 44
|||||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgtagc 43
>RF00711;mir-449;AAGE02012646.1/4275-4404 7159:Aedes aegypti
(yellow fever mosquito)
Length = 130
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 cgctttggcagtgtggttagctggttgtgtag 43
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 ttggcagtgtggttagctggttgtgta 42
|||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgta 41
>RF00711;mir-449;AAZO01004205.1/1293-1391 121224:Pediculus humanus
corporis (human body louse)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ttggcagtgtggttagctggttgtgt 41
||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;ABKQ02014207.1/244697-244790 377270:Anopheles
gambiae S
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 cgctttggcagtgtggttagctggttgtgt 41
|||| |||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgt 41
>RF00711;mir-449;AAJJ01000475.1/25339-25252 7070:Tribolium
castaneum (red flour beetle)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tggcagtgtggttagctggttgtgt 41
|||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAQA01000334.1/14819-14733 6279:Brugia malayi
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tggcagtgtggttagctggttgt 39
|||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgt 38
>RF00711;mir-449;AADG05001988.1/87357-87449 7460:Apis mellifera
(honey bee)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ttggcagtgtggttagctggttgtgt 41
|||||||||| |||||||||||||||
Sbjct: 15 ttggcagtgttgttagctggttgtgt 40
