miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AABU01002774.1/17891638-17891716 7227:Drosophila
melanogaster (fruit fly)
Length = 79
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 11 cccgtaggacgggaaggtgtcaacgttttaaattttgaacaaacattgcacttgtcccgg 70
||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 6 cccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgtcccgg 65
Query: 71 cctatgggcgg 81
|||||||||||
Sbjct: 66 cctatgggcgg 76
>RF00464;mir-92;AAPU01011126.1/203266-203187 7230:Drosophila
mojavensis
Length = 80
Score = 85.7 bits (43), Expect = 9e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 16 aggacgggaaggtgtcaacgttttaaattttgaa-caaacattgcacttgtcccggccta 74
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 11 aggacgggaaggtgtcaacgttttaccttttgattcaaacattgcacttgtcccggccta 70
Query: 75 tgggcgg 81
|| ||||
Sbjct: 71 tgagcgg 77
>RF00464;mir-92;AASS01038642.1/1728-1802 7240:Drosophila simulans
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 52 aacattgcacttgtcccggcctatgggcgg 81
||||||||||||||||||||||||||||||
Sbjct: 43 aacattgcacttgtcccggcctatgggcgg 72
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatgg 77
|||||||||||||||||||||||
Sbjct: 53 attgcacttgtcccggcctatgg 75
>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 51 attgcacttgtcccggcctatg 72
>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
(yellow fever mosquito)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 52 attgcacttgtcccggcctatg 73
>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 48 attgcacttgtcccggcctatg 69
