miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 4 aacggctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacggctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccc 60
Query: 64 cttcaaccagctgtatcagtggttgatt 91
||||||||||||||||||||||||||||
Sbjct: 61 cttcaaccagctgtatcagtggttgatt 88
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 8 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 67
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 9 gctgtatgtagctggttgacatcgggtcagatctatcttttcaagcatttggtccccttc 68
Query: 68 aaccagctgtatcagtggttgat 90
||||||||||| |||||||||||
Sbjct: 69 aaccagctgtagcagtggttgat 91
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 8 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 67
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 4 gctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtccccttc 63
Query: 68 aaccagctgtatcagtggttgat 90
||||||||||| |||||||||||
Sbjct: 64 aaccagctgtagcagtggttgat 86
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 109 bits (55), Expect = 7e-24
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 13 atgtagctggttgacatcgggtcagatctattt-tatcaagtatttggtccccttcaacc 71
||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 10 atgtagctggttgacatcgggtcagatctatttatttgaagcatttggtccccttcaacc 69
Query: 72 agctgtatcagtggttgat 90
||||||| |||||||||||
Sbjct: 70 agctgtagcagtggttgat 88
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 101 bits (51), Expect = 2e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 8 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 67
||||| ||||| |||||||||||||||||||||| |||| || || ||||||||||||||
Sbjct: 4 gctgtgtgtagttggttgacatcgggtcagatctgtttt-tcgagaatttggtccccttc 62
Query: 68 aaccagctgtatcagtggttgat 90
||||||||||| |||||||||||
Sbjct: 63 aaccagctgtagcagtggttgat 85
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 93.7 bits (47), Expect = 4e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 67
||||| |||||||||||||||||||||||||||| |||| | ||| ||||||||||||||
Sbjct: 4 gctgtgtgtagctggttgacatcgggtcagatctgtttt-ttaagcatttggtccccttc 62
Query: 68 aaccagctgta 78
|||||||||||
Sbjct: 63 aaccagctgta 73
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgtatcagtg 84
||||||||||||||||||||||||| |||||
Sbjct: 70 atttggtccccttcaaccagctgtagcagtg 100
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgtatcagtg 84
||||||||||||||||||||||||| |||||
Sbjct: 68 atttggtccccttcaaccagctgtagcagtg 98
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgta 74
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgta 74
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgta 74
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgta 74
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgta 77
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgta 59
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgta 76
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgta 78
|||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgta 78
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tatttggtccccttcaaccagctgt 77
|||||||||||||||||||||||||
Sbjct: 46 tatttggtccccttcaaccagctgt 70
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgt 77
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgt 77
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctgt 77
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 atttggtccccttcaaccagctg 76
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttggtccccttcaaccagctg 76
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tttggtccccttcaaccagctgtatcagtg 84
||||||||||||||||||||| || |||||
Sbjct: 52 tttggtccccttcaaccagctatagcagtg 81
